PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN26289.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 21403.2 Da PI: 8.4834 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.4e-17 | 66 | 116 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeI+dp++ n r++lg++ t+eeA a+++a k++g KHN26289.1 66 RFRGVRRRP-WGKFAAEIWDPKKkN---GRVWLGTYETEEEAGLAYDRACFKMRG 116 79*******.**********86645...7************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.14E-30 | 65 | 126 | No hit | No description |
Pfam | PF00847 | 1.6E-12 | 66 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-29 | 66 | 125 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-21 | 66 | 125 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.051 | 66 | 124 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-34 | 66 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-12 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-12 | 106 | 126 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MTNDVSCVQS YELEHDSHTL MNVSDHPNNN PFQNPTHIDD VIQLFACDTE APLVAREVYA 60 PRKWKRFRGV RRRPWGKFAA EIWDPKKKNG RVWLGTYETE EEAGLAYDRA CFKMRGSKAK 120 LNFPHLIGSH APPERVSVVA ARKPNSPEPC FLPSPPPVTE DSSQPQGLKK RRNLADLLNS 180 SALFCYEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-26 | 63 | 129 | 2 | 68 | ATERF1 |
3gcc_A | 4e-26 | 63 | 129 | 2 | 68 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN26289.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028225035.1 | 1e-134 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A0B2R242 | 1e-139 | A0A0B2R242_GLYSO; Ethylene-responsive transcription factor 13 | ||||
STRING | GLYMA03G26394.1 | 1e-132 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 4e-25 | ethylene-responsive element binding factor 13 |
Publications ? help Back to Top | |||
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