PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26204.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 722aa    MW: 77276 Da    PI: 6.4346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26204.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.3e-16464510455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  KHN26204.1 464 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 510
                 6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.53E-17456514No hitNo description
SuperFamilySSF474591.7E-20457520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-20457518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349460509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13464510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17466515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MPLYELYRLA REKLGKETTS TRAPDLCSSP ENDFFELVWE NGQISSQGQS SRVRRSPSCK  60
SLPSHCLPSH CPKVRDKDVG YGTNTRMGKF GDLDSGLNEI PMSVPSREVD FCHDEDVLPW  120
LDYTSMDGSL QHEYGSDFLH ASNSFTLLDK KSNGNMAFRD SHKTSEEQGN VFKGSSAEQV  180
ETARPKASTS QLFPPSLHQC QTSFVSSRSR ASDITENNNT SNANQDVSYG EITHILSSSS  240
DLSSAKVQKC DPPITSNGSS STIMNFSHFA RPAAMVRANL QNIGLKSGLS SARSDSMEIK  300
NKGAAATSSN PPESILVDSS GECSKEPTMQ CQQVVEQSKP DVNSLQPKSV EQNAVPSKQS  360
EPASKESATK IDQTPNQVLG DSGTKGQTAA EKSMEPAVAS SSVCSGTGAD QGSDEPNQNL  420
KRKTKDTDDS ECHSEDVEEE SAGAKKTAGG RGGAGSKRSR AAEVHNLSER RRRDRINEKM  480
RALQELIPNC NKVDKASMLD EAIEYLKTLQ LQVQIMSMGA GLYMPPMMLP AGMQHMHAPH  540
MAPFSPMGVG MHMGYGMGYG MGMPDMNGGS SRFPMIQVPQ MQGTHIPVAH MSGPTALHGM  600
ARSNPPGYGL PGQGYPMHMP PASVFPFSGG PLMNSPAQGL HARGSSGLVE TVDSASASGL  660
KDQMQNVDPQ VKQSTGGCDS TSQMPTQCEA AAVGFEQSAL AHSRGHASKA NDNGAVNPDP  720
GR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1468473ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26204.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311320.0KT031132.1 Glycine max clone HN_WYQ_58 bHLH transcription factor (Glyma20g22291.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006605776.10.0transcription factor PIF3
RefseqXP_028221626.10.0transcription factor PIF3-like
TrEMBLA0A0B2R1U00.0A0A0B2R1U0_GLYSO; Transcription factor PIF3
STRINGGLYMA20G22291.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-62phytochrome interacting factor 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]