PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26182.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 160aa    MW: 18177 Da    PI: 9.0417
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26182.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.6e-094973226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                 ++lC +f  tG+C+yGd+Ck+ H+
  KHN26182.1 49 NRSLCFHFVNTGFCRYGDSCKYLHP 73
                5899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-6747No hitNo description
SuperFamilySSF902295.23E-84776IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.0984875IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-54974IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-74973IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-75172IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MAVKKCYCEK QFQDTPADRK RHVQGIQQQQ AKARWYDSFK QQQIPPVPNR SLCFHFVNTG  60
FCRYGDSCKY LHPIPNNNLQ QPPVLTTPSP SPPPGNVVGV SLDNLPPLLQ PPPEGVYPHL  120
PFSTGDKFVI LRTSHYCISV SVFNHFISLL FLPMFLPVFP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26182.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0920281e-124BT092028.1 Soybean clone JCVI-FLGm-9K20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236361.21e-66putative U1 zinc finger protein
RefseqXP_028182862.11e-66zinc finger CCCH domain-containing protein 3 isoform X2
SwissprotQ0JP114e-26C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0B2R2R31e-113A0A0B2R2R3_GLYSO; Zinc finger CCCH domain-containing protein 3
STRINGGLYMA20G22611.11e-112(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.19e-17C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]