PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26151.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 179aa    MW: 19954.3 Da    PI: 9.6848
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26151.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.92.4e-1779114134
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +Cgt++  Tp++Rrgp+g+++LCnaCGl+++ +g
  KHN26151.1  79 CKHCGTSSksTPMMRRGPSGPRSLCNACGLFWANRG 114
                 ********************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062032.6E-161153IPR010402CCT domain
PROSITE profilePS5101712.4811153IPR010402CCT domain
PROSITE profilePS5011410.31773124IPR000679Zinc finger, GATA-type
SMARTSM004015.8E-1573126IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-1275125No hitNo description
Gene3DG3DSA:3.30.50.103.0E-1677120IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.80E-1478124No hitNo description
PROSITE patternPS00344079106IPR000679Zinc finger, GATA-type
PfamPF003205.3E-1579114IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEFPKCSLPQ RAASLDRFRQ KRKERCFDKK VRYSVRQEVA LRMHRNKGQF TSSKKQDGAN  60
SYGTDQDSGQ DDSQSETSCK HCGTSSKSTP MMRRGPSGPR SLCNACGLFW ANRGALRDLS  120
KRNQEHSLPP VEQVDGGNDP DCRTAAADPA QNNLAAFSEP VNPALVADRK VFQSQKMLE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26151.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518268.11e-130GATA transcription factor 25
RefseqXP_028213198.11e-130GATA transcription factor 25-like
SwissprotQ9LRH66e-68GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A445LSA91e-129A0A445LSA9_GLYSO; GATA transcription factor 25
TrEMBLK7K9Y21e-129K7K9Y2_SOYBN; Uncharacterized protein
STRINGGLYMA02G37980.21e-130(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-62GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]