PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN25966.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 279aa MW: 30925.5 Da PI: 10.0082 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 318.6 | 2e-97 | 1 | 279 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalll 86 mddd + n+gyyep +lglqlm i+erd+k+ r+ + l++ ++++++rd ++ rd++++ +++++++++ KHN25966.1 1 MDDDVLNMPNWGYYEPF--RGGHLGLQLMPGITERDTKPflpgRDPAM-LIGANGTFHPRDcavseapmpLNY-VRDNWINP--------RDRFFNMQQ 87 899988779******98..4579******************9888888.9***********777777766666.66777776........567888888 PP GAGA_bind 87 venslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad 184 +n +++ vl++t+ + +lq ++++ ++ + +e ++ ++ke ++kkrq++ ++kakk++k +k++ +++ KHN25966.1 88 PTN-------PSYAVLPETSGAPNLQI-----IQPPDSSsDEKVDRVE------EVAVKKEGGQSKKRQTKGALSTPKAKKPRK----PKDNGNAPV-- 162 555.......568999******99998.....3332222112222233......344444445555455444444444444444....334667777.. PP GAGA_bind 185 erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpv 283 +r+k +kk+++lv+ng+++D+s+lP+PvCsCtGa++qCY+WG+GGWqSaCCtt++S+yPLP+s krrgaRiagrKmSqgafkk+LekLaaeGy+++np+ KHN25966.1 163 QRAKPPKKTMELVINGIDMDISGLPTPVCSCTGAPQQCYRWGCGGWQSACCTTNVSIYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPI 261 689************************************************************************************************ PP GAGA_bind 284 DLkdhWAkHGtnkfvtir 301 DLk+hWA+HGtnkfvtir KHN25966.1 262 DLKTHWARHGTNKFVTIR 279 *****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.3E-164 | 1 | 279 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 4.8E-107 | 1 | 279 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MDDDVLNMPN WGYYEPFRGG HLGLQLMPGI TERDTKPFLP GRDPAMLIGA NGTFHPRDCA 60 VSEAPMPLNY VRDNWINPRD RFFNMQQPTN PSYAVLPETS GAPNLQIIQP PDSSSDEKVD 120 RVEEVAVKKE GGQSKKRQTK GALSTPKAKK PRKPKDNGNA PVQRAKPPKK TMELVINGID 180 MDISGLPTPV CSCTGAPQQC YRWGCGGWQS ACCTTNVSIY PLPMSMKRRG ARIAGRKMSQ 240 GAFKKVLEKL AAEGYNFANP IDLKTHWARH GTNKFVTIR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00253 | DAP | Transfer from AT2G01930 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN25966.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096215 | 0.0 | BT096215.1 Soybean clone JCVI-FLGm-15O8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028232547.1 | 0.0 | protein BASIC PENTACYSTEINE2-like | ||||
Refseq | XP_028232548.1 | 0.0 | protein BASIC PENTACYSTEINE2-like | ||||
Refseq | XP_028232549.1 | 0.0 | protein BASIC PENTACYSTEINE2-like | ||||
Swissprot | Q9SKD0 | 1e-107 | BPC1_ARATH; Protein BASIC PENTACYSTEINE1 | ||||
TrEMBL | A0A445KNR8 | 0.0 | A0A445KNR8_GLYSO; Protein BASIC PENTACYSTEINE1 isoform A | ||||
STRING | GLYMA05G26790.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2370 | 32 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01930.2 | 1e-110 | basic pentacysteine1 |
Publications ? help Back to Top | |||
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