PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN25939.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 507aa MW: 56830.5 Da PI: 5.6968 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.4e-13 | 313 | 359 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + E++RR+++N ++ Lr l+P++ +K + a+++ A++YI++L KHN25939.1 313 TKHFATEKQRREQLNGKYKILRNLIPSP-----TKIDRASVVGDAIDYIREL 359 79**************************.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-14 | 308 | 372 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.818 | 310 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.78E-11 | 313 | 359 | No hit | No description |
Pfam | PF00010 | 2.8E-10 | 313 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-11 | 313 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-10 | 316 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MHEQTGCFDP NTMGESIPFL KDNFPQTLPP SPIVVGNTTN SNNNSLEQNL RLSVEELSYN 60 HHYPQHQEDH VSTYVSGVTA TSIEIPHPQH LGLNMGNSYI NNNNNMDNHL VQEVIDAYPY 120 QLSTWDPATV QELQDIAYAN HTEQQQQQQQ NEQQFQQIET QNCSQSYNNP SSILDPPYPS 180 PDLLNLLHMP RCSASSLLTN PSICLTNPTQ NTPNFQNPMA FLGDLTIGSE NTSASSVLYD 240 PLFHLNLPPQ PPALRELFQS LPRGYSLPTN SRNGSLFAGG DEMEGDGSQL DMGVLEFNRV 300 TPSVGKGRGG KATKHFATEK QRREQLNGKY KILRNLIPSP TKIDRASVVG DAIDYIRELI 360 RTVNELKLLV EKKRYAKERY KRPKTEDAAE SCNIKPFGDP DGGIRTSWLQ RKSKDSEVDV 420 RIIDDDVTIK LFQRKKINCL LFVSKVLDEL QLELHHVAGG HVGEYCSFLF NSKIMEGSSV 480 YASAIANRVI DVLDSQYTAA VPHTNSY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN25939.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235883 | 0.0 | AC235883.2 Glycine max clone GM_WBc0013D02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028232509.1 | 0.0 | transcription factor bHLH89-like | ||||
TrEMBL | A0A445KMZ1 | 0.0 | A0A445KMZ1_GLYSO; Transcription factor bHLH91 | ||||
STRING | GLYMA05G26490.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3743 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31210.1 | 4e-72 | bHLH family protein |
Publications ? help Back to Top | |||
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