PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN25843.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | STAT | ||||||||
Protein Properties | Length: 707aa MW: 79051.5 Da PI: 5.4094 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 200.7 | 1.3e-62 | 222 | 343 | 1 | 122 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfle 99 ldvvl++a+gqpv+k+ ev asLlyad+g++ve++ d+eapLL+sydG+efss +rp+kll GrasfklkisqLsskcdnrLf i+f++pkl +ypfle KHN25843.1 222 LDVVLSDAFGQPVDKENEVFASLLYADTGAPVENTADDEAPLLASYDGIEFSSCERPSKLLLGRASFKLKISQLSSKCDNRLFLISFCVPKLGNYPFLE 320 8************************************************************************************************** PP STAT 100 avskpirCisrsrntrsssltkk 122 a+s+pirCisrsrntr s+l++k KHN25843.1 321 AYSRPIRCISRSRNTRVSTLVWK 343 *****************999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF49899 | 2.77E-7 | 26 | 173 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Gene3D | G3DSA:3.30.505.10 | 2.0E-7 | 606 | 675 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 3.02E-9 | 608 | 699 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 9.722 | 614 | 696 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 707 aa Download sequence Send to blast |
MDTDAVGSEG YSPLKELRLE IEVKEGTFSL CFWLYLTSST TFPVTIIQQV FSDISESAPF 60 LVIDDNKRIH MLPVLLLHEE APETGNINSW TEVPHATVDF EFLLEKWVHV GCEVCPDHIQ 120 LQINGEIVGE KSLCSLLNKE SGSSHLKKLT LANVGGDGKS VQGYVHNFEI FPIITSIKDC 180 HLKCPPLKLS IDESSVSEIE EESDGVWGIV GGKASCRRNF SLDVVLSDAF GQPVDKENEV 240 FASLLYADTG APVENTADDE APLLASYDGI EFSSCERPSK LLLGRASFKL KISQLSSKCD 300 NRLFLISFCV PKLGNYPFLE AYSRPIRCIS RSRNTRVSTL VWKRSTALHC HSLSQSSAMD 360 DRSLDLQHSS HEAQANPLMK RFRLGQDKTS VSVKADPTIE QPDEECNSHV RTANQVENGF 420 PTSLDGRSAN FIEAEDSPSD SESIGEGKSP LNSMASRRNP ISDMTIFKYC LASLAERSLM 480 LKEIATFASG KEISELANHV SLYSGCSHHG NQILLAKRLI KDGTNLWKVM SPNNHHIPWE 540 NAVYEIEEQF MKIASCCSRS LSPQDLNLLR RIAGCQEYLT QENFEKLWCW LYPVAFIISR 600 DWINPIWNST SPKWIEGFIT KEEAESSLQG PTGFQEPGTF ILRFPTSRSW PHPDAGNLVV 660 SYVGNDYKLH HRLLSMHHVY GSGDNRVDVK PLQDMLLAEP ELSRLGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN25843.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-133 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006597985.1 | 0.0 | SH2 domain-containing protein A isoform X1 | ||||
Refseq | XP_028204147.1 | 0.0 | SH2 domain-containing protein A-like isoform X1 | ||||
Swissprot | Q56XZ1 | 0.0 | SHB_ARATH; SH2 domain-containing protein B | ||||
TrEMBL | A0A0B2R1B5 | 0.0 | A0A0B2R1B5_GLYSO; Signal transducer and activator of transcription C | ||||
STRING | XP_007133370.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6710 | 30 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |
Publications ? help Back to Top | |||
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