PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25843.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family STAT
Protein Properties Length: 707aa    MW: 79051.5 Da    PI: 5.4094
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25843.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT200.71.3e-622223431122
        STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfle 99 
                 ldvvl++a+gqpv+k+ ev asLlyad+g++ve++ d+eapLL+sydG+efss +rp+kll GrasfklkisqLsskcdnrLf i+f++pkl +ypfle
  KHN25843.1 222 LDVVLSDAFGQPVDKENEVFASLLYADTGAPVENTADDEAPLLASYDGIEFSSCERPSKLLLGRASFKLKISQLSSKCDNRLFLISFCVPKLGNYPFLE 320
                 8************************************************************************************************** PP

        STAT 100 avskpirCisrsrntrsssltkk 122
                 a+s+pirCisrsrntr s+l++k
  KHN25843.1 321 AYSRPIRCISRSRNTRVSTLVWK 343
                 *****************999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498992.77E-726173IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.102.0E-7606675IPR000980SH2 domain
SuperFamilySSF555503.02E-9608699IPR000980SH2 domain
PROSITE profilePS500019.722614696IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MDTDAVGSEG YSPLKELRLE IEVKEGTFSL CFWLYLTSST TFPVTIIQQV FSDISESAPF  60
LVIDDNKRIH MLPVLLLHEE APETGNINSW TEVPHATVDF EFLLEKWVHV GCEVCPDHIQ  120
LQINGEIVGE KSLCSLLNKE SGSSHLKKLT LANVGGDGKS VQGYVHNFEI FPIITSIKDC  180
HLKCPPLKLS IDESSVSEIE EESDGVWGIV GGKASCRRNF SLDVVLSDAF GQPVDKENEV  240
FASLLYADTG APVENTADDE APLLASYDGI EFSSCERPSK LLLGRASFKL KISQLSSKCD  300
NRLFLISFCV PKLGNYPFLE AYSRPIRCIS RSRNTRVSTL VWKRSTALHC HSLSQSSAMD  360
DRSLDLQHSS HEAQANPLMK RFRLGQDKTS VSVKADPTIE QPDEECNSHV RTANQVENGF  420
PTSLDGRSAN FIEAEDSPSD SESIGEGKSP LNSMASRRNP ISDMTIFKYC LASLAERSLM  480
LKEIATFASG KEISELANHV SLYSGCSHHG NQILLAKRLI KDGTNLWKVM SPNNHHIPWE  540
NAVYEIEEQF MKIASCCSRS LSPQDLNLLR RIAGCQEYLT QENFEKLWCW LYPVAFIISR  600
DWINPIWNST SPKWIEGFIT KEEAESSLQG PTGFQEPGTF ILRFPTSRSW PHPDAGNLVV  660
SYVGNDYKLH HRLLSMHHVY GSGDNRVDVK PLQDMLLAEP ELSRLGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25843.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-133AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597985.10.0SH2 domain-containing protein A isoform X1
RefseqXP_028204147.10.0SH2 domain-containing protein A-like isoform X1
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLA0A0B2R1B50.0A0A0B2R1B5_GLYSO; Signal transducer and activator of transcription C
STRINGXP_007133370.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67103036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]