PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25765.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 239aa    MW: 26715.5 Da    PI: 7.5036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25765.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH162.2e-0581135554
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C.......TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPk.as....kapskKlsKaeiLekAveYIksL 54 
                 +  rE+ RRd++N++ + +  ++   +s     ++++K +K++ L  A + + +L
  KHN25765.1  81 KACREKLRRDKLNERHAIILHIVFLeLSsilePGRQPKTDKVALLSDAARVVIQL 135
                 678*************999999999777999999*************99887766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.05176135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-480140No hitNo description
SuperFamilySSF474596.38E-882158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-884157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDMNSSGGAC GWLYDYGFDI PVAGSDFMAS DSGGFSWGPQ SYNFKGPSNM SLEMEYSLDS  60
TVMENGPSKR LRTESCASGS KACREKLRRD KLNERHAIIL HIVFLELSSI LEPGRQPKTD  120
KVALLSDAAR VVIQLRNEAE RLKEMNDELQ AKVKELKGEK NELRDEKNRL KEEKEKLEKQ  180
VKLTNIQPSF LPQAPDAKGQ VGSHKLIPFI GYPGIAMWQF MSPAAVDTSK DHLLRPPVA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25765.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0971260.0BT097126.1 Soybean clone JCVI-FLGm-15N2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242620.21e-160transcription factor bHLH115-like
RefseqXP_028192378.11e-160transcription factor bHLH115-like
SwissprotQ9C6823e-67BH115_ARATH; Transcription factor bHLH115
SwissprotQ9FH373e-67ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0B2QW231e-177A0A0B2QW23_GLYSO; Transcription factor ILR3
STRINGGLYMA13G38140.11e-159(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149161214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.12e-56bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Li X,Zhang H,Ai Q,Liang G,Yu D
    Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2478-93
    [PMID:26921305]
  3. Aparicio F,Pallás V
    The coat protein of Alfalfa mosaic virus interacts and interferes with the transcriptional activity of the bHLH transcription factor ILR3 promoting salicylic acid-dependent defence signalling response.
    Mol. Plant Pathol., 2017. 18(2): p. 173-186
    [PMID:26929142]
  4. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  6. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]
  7. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]
  8. Samira R, et al.
    The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis.
    Plant Mol. Biol., 2018. 97(4-5): p. 297-309
    [PMID:29882068]