PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN25765.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 26715.5 Da PI: 7.5036 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16 | 2.2e-05 | 81 | 135 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C.......TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.as....kapskKlsKaeiLekAveYIksL 54 + rE+ RRd++N++ + + ++ +s ++++K +K++ L A + + +L KHN25765.1 81 KACREKLRRDKLNERHAIILHIVFLeLSsilePGRQPKTDKVALLSDAARVVIQL 135 678*************999999999777999999*************99887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.051 | 76 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.75E-4 | 80 | 140 | No hit | No description |
SuperFamily | SSF47459 | 6.38E-8 | 82 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-8 | 84 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDMNSSGGAC GWLYDYGFDI PVAGSDFMAS DSGGFSWGPQ SYNFKGPSNM SLEMEYSLDS 60 TVMENGPSKR LRTESCASGS KACREKLRRD KLNERHAIIL HIVFLELSSI LEPGRQPKTD 120 KVALLSDAAR VVIQLRNEAE RLKEMNDELQ AKVKELKGEK NELRDEKNRL KEEKEKLEKQ 180 VKLTNIQPSF LPQAPDAKGQ VGSHKLIPFI GYPGIAMWQF MSPAAVDTSK DHLLRPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN25765.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097126 | 0.0 | BT097126.1 Soybean clone JCVI-FLGm-15N2 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001242620.2 | 1e-160 | transcription factor bHLH115-like | ||||
Refseq | XP_028192378.1 | 1e-160 | transcription factor bHLH115-like | ||||
Swissprot | Q9C682 | 3e-67 | BH115_ARATH; Transcription factor bHLH115 | ||||
Swissprot | Q9FH37 | 3e-67 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A0B2QW23 | 1e-177 | A0A0B2QW23_GLYSO; Transcription factor ILR3 | ||||
STRING | GLYMA13G38140.1 | 1e-159 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14916 | 12 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51070.1 | 2e-56 | bHLH family protein |