PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25760.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 389aa    MW: 43983.4 Da    PI: 6.1824
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25760.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS266.77.8e-82237325373
        GRAS  25 arlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshltaNqaIleavegeervHiiDfdisq 121
                 + l++ asp gd++qRl++ f++AL +r +r +++ ++   +++     + + +++++l  ++++ P+++f++ + N+ I++a+ g +rvHi+Df+i++
  KHN25760.1   2 WVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMSFKGSNTI----QRRLMSVTELagYVDLIPWHRFGYCASNNEIYKAITGFQRVHIVDFSITH 96 
                 7899***************************77766643322222....333334444466************************************** PP

        GRAS 122 GlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl....................vakrledleleeLrvk 197
                 ++QWp++++aLa+RpegppslRiT+ +   ++    + +++e+g rL +fA+  +vpfefnv+                     +  l+ l++ +L+++
  KHN25760.1  97 CMQWPTFIDALAKRPEGPPSLRITVPSCRPHVpplVNISIHEVGLRLGNFAKFRDVPFEFNVIgntegpltpaelsdestsfhFEAMLSLLNPTMLNLR 195
                 ************************9888555588999**************************************9999998556689999******** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                 ++Eal++n++  l +l d++  ++      rd++L+l+k+l+P++v +v++++d++++s+  r++ ++++ +  fd+le+ lp++s +r+  E   +g+
  KHN25760.1 196 EDEALVINCQNWLRYLSDDRKGISCqsfsLRDAFLNLIKGLNPRIVLLVDEDCDLSASSLTSRITTCFNHLWIPFDALETFLPKDSCQRSEFESD-IGQ 293
                 *****************9987665444669*****************************************************************.*** PP

        GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 +i+n+++ eg +r+er e+  + ++r++++G+ +vp+ ++++ ++k ll +++  g+ ++ e+g lvl+Wk+++ v+++aW
  KHN25760.1 294 KIENIISYEGHQRIERSESGVQMSQRMKNVGYLSVPFCDETVREIKGLLDEHA-SGWGMKREEGMLVLTWKGNSCVFATAW 373
                 *****************************************************.8899*********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.6771355IPR005202Transcription factor GRAS
PfamPF035142.7E-792373IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MWVLNNVASP VGDTNQRLTS WFLRALISRA SRICPTAMSF KGSNTIQRRL MSVTELAGYV  60
DLIPWHRFGY CASNNEIYKA ITGFQRVHIV DFSITHCMQW PTFIDALAKR PEGPPSLRIT  120
VPSCRPHVPP LVNISIHEVG LRLGNFAKFR DVPFEFNVIG NTEGPLTPAE LSDESTSFHF  180
EAMLSLLNPT MLNLREDEAL VINCQNWLRY LSDDRKGISC QSFSLRDAFL NLIKGLNPRI  240
VLLVDEDCDL SASSLTSRIT TCFNHLWIPF DALETFLPKD SCQRSEFESD IGQKIENIIS  300
YEGHQRIERS ESGVQMSQRM KNVGYLSVPF CDETVREIKG LLDEHASGWG MKREEGMLVL  360
TWKGNSCVFA TAWVPCEMRD HIGIDAGLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-501375110474Protein SHORT-ROOT
5b3h_B2e-50137556420Protein SHORT-ROOT
5b3h_E2e-50137556420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539510.20.0scarecrow-like protein 32
RefseqXP_028193686.10.0scarecrow-like protein 32
TrEMBLA0A0B2QW200.0A0A0B2QW20_GLYSO; Scarecrow-like protein 32
STRINGGLYMA12G32350.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-108GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]