PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25657.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 298aa    MW: 33468.9 Da    PI: 5.6326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25657.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-20105155155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +g+W+AeIrdps    r  r +lg+++taeeAa  +++a+ kl+g
  KHN25657.1 105 KKFRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTYDTAEEAALVYDNAAIKLRG 155
                 59********.**********84....34*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.62E-32105162No hitNo description
PfamPF008473.5E-13106155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-30106162IPR001471AP2/ERF domain
SMARTSM003801.8E-36106169IPR001471AP2/ERF domain
PROSITE profilePS5103223.248106163IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21106162IPR016177DNA-binding domain
PRINTSPR003673.5E-10107118IPR001471AP2/ERF domain
PRINTSPR003673.5E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MTAPPSKYTH HSKLLIPSEE DPPKHPYPRL VRITVTDTEA TDSSSDEEQH TSTRHRHRKF  60
VNEISIESSC ASENDGAASR KRIRRRSTAT PKGRASDTRL VSNGKKFRGV RQRPWGKWAA  120
EIRDPSRRVR LWLGTYDTAE EAALVYDNAA IKLRGPHALT NFITPPATCH NTDPPPVANG  180
YGYASGEETN DNNNNLFSPT SVLHSCSLSE EAESVRGKDD EYSSVSMSRV KAESPFPVPS  240
EIEFDFRGIS PVPESVLFYD DDWSSEFLTA CEDFGFNRNR DFFQDIDDLF VSDPLLAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21102162162ATERF1
3gcc_A4e-21102162162ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25657.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014632620.10.0ethylene-responsive transcription factor CRF2
RefseqXP_028247986.10.0ethylene-responsive transcription factor CRF2-like
TrEMBLA0A0R0LLN50.0A0A0R0LLN5_SOYBN; Uncharacterized protein
TrEMBLA0A445M6U90.0A0A445M6U9_GLYSO; Ethylene-responsive transcription factor CRF2
STRINGGLYMA01G43350.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-52cytokinin response factor 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]