PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25618.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family E2F/DP
Protein Properties Length: 367aa    MW: 40499.2 Da    PI: 4.6512
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25618.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP757.6e-241312021671
     E2F_TDP  16 lleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  KHN25618.1 131 VCEKVESkGRTTYNEVADELVAEfadpingvstpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 202
                 899*9999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094044.2E-1134367IPR015648Transcription factor DP
SMARTSM013724.8E-2330202IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-38130208IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.05E-17130203IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.4E-21131202IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144582.29E-44207310IPR014889Transcription factor DP, C-terminal
SMARTSM011386.1E-69209365IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.28E-42209324No hitNo description
PfamPF087814.4E-42210324IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGTQPQQTFW EEEDEEMQGR GTTISGQSMS TSRSLGSPSS RSEQTMATPA SDSTFLRLNH  60
LDIHGDDAGS QGAVAASPGA AVKLCLGDLL VMGSNPETAS LHMQGLGEAK KLSHDDIFPY  120
WLYFPSIGCP VCEKVESKGR TTYNEVADEL VAEFADPING VSTPDQQQYD EKNIRRRVYD  180
ALNVLMAMDI ISKDKKEIQW KGLPRTSLSD MEELKSERLG LRNRIEKKAA YLQELEEQYI  240
GLQKLIQRNE QLYSSGNAPN GGVSLPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL  300
HDDNYVLKAM KLCEGSHNDN TTDNPTDGGE GSSIYAQVPT SVSNPPNRPP SSPPLPGILK  360
ARVKNEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-261312071993PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25618.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937950.0BT093795.1 Soybean clone JCVI-FLGm-17D20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517526.10.0transcription factor-like protein DPB
RefseqXP_028248476.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-133DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A445M7020.0A0A445M702_GLYSO; Transcription factor-like protein DPB isoform A
TrEMBLI1JAG80.0I1JAG8_SOYBN; Uncharacterized protein
STRINGGLYMA01G43800.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-126Transcription factor DP
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]