PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25317.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 1225aa    MW: 139285 Da    PI: 5.7362
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25317.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.3e-1493710161497
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97  
                  +   +p+ f++  +++ + + +++l++ s r W vk   r   ++ ++ +GW+ F ++n L + Df+vFk+++r+ef  vv ++
  KHN25317.1  937 SEKLIPNAFVRLPQLQGRIPEDVILRNASERAWHVKT--RYVEEKLYFDDGWRAFHQENCLGQADFLVFKHERRNEF--VVLIL 1016
                  45689*****77788888999****************..777778*************************9988888..88776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013626.8E-141510823IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminal
PfamPF049504.0E-87520824IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminal
PROSITE profilePS5086312.4649241019IPR003340B3 DNA binding domain
SMARTSM010190.00179271019IPR003340B3 DNA binding domain
PfamPF023622.8E-119371016IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-129401017IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-159411018IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-129411016No hitNo description
SuperFamilySSF1019368.04E-710991221IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.9E-611011222IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1225 aa     Download sequence    Send to blast
MAVNDADQSN KAHRTRQSGA KTNKKKTKKK QKLNPDDVGG EDPKKQNPKA FAFSSSNKAK  60
RLQSRAVEKE QRRLHVPVID RSYGEPAPYV VVVQGPPQVH IAGVGDYSLA GITALPDPCP  120
LPSAAKKKGL RDKEKLFYAP MSGLGDLLYD KDAVYININD HLVQFSKVDD ENSAMTGKGK  180
GSDVGEDLVK SLQNIKYSIN EKLENSFINI FGQKANVSSG ALGDAHGTNK NVEQNDKTEA  240
LDKYQPGTGE DNNKTDLDVS ESSDRDEDDA TDSEASGSDE DEDAPNSNAR NGVHLQEHID  300
FQDGRWRRRA IFGNDVDQND LMDSEGDEDG ATSNDDVESS EEEEEDGNDN DDTNEDDTGN  360
VSKWKESLAE RTLSRKTPSL MQLVYGESTI NSTTINREND NSGDEESDDD FFKPIEEVKK  420
LNMRDGLNDD GMFNTEDCAK CTQFVVQRWD ENDNEEIRNR FVSGNVAKAA LRNALPAANT  480
EEDNDDVYAD FEDLETGEKH ENHRTDAAFA ATTHKGDDLE AEERRLKKLA LQEDTGNENE  540
VKFHRGQANE SSYFDKLKEE IELQKQMNIA ELNDLDEATR LEIEGFQTGT YLRLEIRDVP  600
CEMVEYFDPY HPILVGGIGI GEENVGYMQA RLKRHRWHKK VLKTRDPIIV SVGWRRYQTT  660
PIYAIEDSNG RHRMLKYTPE HMHCLAMFWG PLAPPNTGVV AIQNLSNNQA TFRITATAVV  720
LEFNHAARIV KKIKLVGYPC KIFKKTALIK DMFTSDLEVA RFEGAAIRTV SGIRGQVKKA  780
AKEEIGNQAK RKGGQTKEGI ARCTFEDKIL MSDIVFLRAW TQVEVPQFYN PLTTALQPRD  840
MTWKGMRTVA ELRREHNLPI PVNKDSLYKK IERKPRKFNP LVIPKSLQAS LPFASKPKDI  900
SKRNKPLLEE RRGRGVVMEP RERKVHALVQ HLQLINSEKL IPNAFVRLPQ LQGRIPEDVI  960
LRNASERAWH VKTRYVEEKL YFDDGWRAFH QENCLGQADF LVFKHERRNE FVVLILQLST  1020
QCQKPLVKME EEQAATQLVE EPDSSSDDDD EESGEEFSAG FNLQSHHRRA CKRETASSSN  1080
PNAEDPLPQY VFDPEICIHP ENHFFKAKLY RTRPNELHIP GNAIQEFSLT LPEKITLICC  1140
QPCQRKDIPM NELGDYHHNL TPIRIKYQEV TGIVCRWQDH RIYIKGWASF CRRNKIERND  1200
TCFCEVISGE DQVVKTLRVH VARRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5jpq_a1e-126769392691123Bms1
5wyj_B11e-126769392691123Ribosome biogenesis protein BMS1
5wyk_B11e-126769392691123Ribosome biogenesis protein BMS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25317.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0984200.0BT098420.1 Soybean clone JCVI-FLGm-16J3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028194820.10.0ribosome biogenesis protein BMS1 homolog isoform X1
TrEMBLA0A445HL540.0A0A445HL54_GLYSO; Ribosome biogenesis protein bms1 isoform A
STRINGGLYMA12G05360.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-09B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]