PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN25317.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 1225aa MW: 139285 Da PI: 5.7362 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.7 | 2.3e-14 | 937 | 1016 | 14 | 97 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + +p+ f++ +++ + + +++l++ s r W vk r ++ ++ +GW+ F ++n L + Df+vFk+++r+ef vv ++ KHN25317.1 937 SEKLIPNAFVRLPQLQGRIPEDVILRNASERAWHVKT--RYVEEKLYFDDGWRAFHQENCLGQADFLVFKHERRNEF--VVLIL 1016 45689*****77788888999****************..777778*************************9988888..88776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01362 | 6.8E-141 | 510 | 823 | IPR007034 | Ribosome biogenesis protein BMS1/TSR1, C-terminal |
Pfam | PF04950 | 4.0E-87 | 520 | 824 | IPR007034 | Ribosome biogenesis protein BMS1/TSR1, C-terminal |
PROSITE profile | PS50863 | 12.464 | 924 | 1019 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0017 | 927 | 1019 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-11 | 937 | 1016 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.12E-12 | 940 | 1017 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.1E-15 | 941 | 1018 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.14E-12 | 941 | 1016 | No hit | No description |
SuperFamily | SSF101936 | 8.04E-7 | 1099 | 1221 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.9E-6 | 1101 | 1222 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1225 aa Download sequence Send to blast |
MAVNDADQSN KAHRTRQSGA KTNKKKTKKK QKLNPDDVGG EDPKKQNPKA FAFSSSNKAK 60 RLQSRAVEKE QRRLHVPVID RSYGEPAPYV VVVQGPPQVH IAGVGDYSLA GITALPDPCP 120 LPSAAKKKGL RDKEKLFYAP MSGLGDLLYD KDAVYININD HLVQFSKVDD ENSAMTGKGK 180 GSDVGEDLVK SLQNIKYSIN EKLENSFINI FGQKANVSSG ALGDAHGTNK NVEQNDKTEA 240 LDKYQPGTGE DNNKTDLDVS ESSDRDEDDA TDSEASGSDE DEDAPNSNAR NGVHLQEHID 300 FQDGRWRRRA IFGNDVDQND LMDSEGDEDG ATSNDDVESS EEEEEDGNDN DDTNEDDTGN 360 VSKWKESLAE RTLSRKTPSL MQLVYGESTI NSTTINREND NSGDEESDDD FFKPIEEVKK 420 LNMRDGLNDD GMFNTEDCAK CTQFVVQRWD ENDNEEIRNR FVSGNVAKAA LRNALPAANT 480 EEDNDDVYAD FEDLETGEKH ENHRTDAAFA ATTHKGDDLE AEERRLKKLA LQEDTGNENE 540 VKFHRGQANE SSYFDKLKEE IELQKQMNIA ELNDLDEATR LEIEGFQTGT YLRLEIRDVP 600 CEMVEYFDPY HPILVGGIGI GEENVGYMQA RLKRHRWHKK VLKTRDPIIV SVGWRRYQTT 660 PIYAIEDSNG RHRMLKYTPE HMHCLAMFWG PLAPPNTGVV AIQNLSNNQA TFRITATAVV 720 LEFNHAARIV KKIKLVGYPC KIFKKTALIK DMFTSDLEVA RFEGAAIRTV SGIRGQVKKA 780 AKEEIGNQAK RKGGQTKEGI ARCTFEDKIL MSDIVFLRAW TQVEVPQFYN PLTTALQPRD 840 MTWKGMRTVA ELRREHNLPI PVNKDSLYKK IERKPRKFNP LVIPKSLQAS LPFASKPKDI 900 SKRNKPLLEE RRGRGVVMEP RERKVHALVQ HLQLINSEKL IPNAFVRLPQ LQGRIPEDVI 960 LRNASERAWH VKTRYVEEKL YFDDGWRAFH QENCLGQADF LVFKHERRNE FVVLILQLST 1020 QCQKPLVKME EEQAATQLVE EPDSSSDDDD EESGEEFSAG FNLQSHHRRA CKRETASSSN 1080 PNAEDPLPQY VFDPEICIHP ENHFFKAKLY RTRPNELHIP GNAIQEFSLT LPEKITLICC 1140 QPCQRKDIPM NELGDYHHNL TPIRIKYQEV TGIVCRWQDH RIYIKGWASF CRRNKIERND 1200 TCFCEVISGE DQVVKTLRVH VARRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5jpq_a | 1e-126 | 76 | 939 | 269 | 1123 | Bms1 |
5wyj_B1 | 1e-126 | 76 | 939 | 269 | 1123 | Ribosome biogenesis protein BMS1 |
5wyk_B1 | 1e-126 | 76 | 939 | 269 | 1123 | Ribosome biogenesis protein BMS1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN25317.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098420 | 0.0 | BT098420.1 Soybean clone JCVI-FLGm-16J3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028194820.1 | 0.0 | ribosome biogenesis protein BMS1 homolog isoform X1 | ||||
TrEMBL | A0A445HL54 | 0.0 | A0A445HL54_GLYSO; Ribosome biogenesis protein bms1 isoform A | ||||
STRING | GLYMA12G05360.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 2e-09 | B3 family protein |
Publications ? help Back to Top | |||
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