PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN25302.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 157aa MW: 17771.3 Da PI: 7.8262 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 42 | 3.1e-13 | 60 | 142 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+++GF ++++skk r+g+ ++Cs+eg+ + + k t ++ + +C+a+++v+ + dg w+++k +l+ +Hel+p KHN25302.1 60 SFYRQYASRMGFGFKVRSSKKG-RDGKLHYFMLTCSREGTCVPITLK------TLPTINNNCEANITVSFK-DGLWYIMKAVLDRSHELSP 142 5***************999887.8888**************998777......999999***********9.****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-10 | 60 | 142 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MKDRNNHDEC WESNSVDNGA ESMEEVHELD VIMHDNTNGG FEPCEPASGM SFPSKEAVKS 60 FYRQYASRMG FGFKVRSSKK GRDGKLHYFM LTCSREGTCV PITLKTLPTI NNNCEANITV 120 SFKDGLWYIM KAVLDRSHEL SPTKAMMVRV KKTLACM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN25302.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006590934.1 | 6e-95 | protein FAR-RED IMPAIRED RESPONSE 1 | ||||
Refseq | XP_028188458.1 | 6e-95 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A445I0S5 | 1e-93 | A0A445I0S5_GLYSO; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | K7LPF2 | 1e-93 | K7LPF2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G13523.1 | 2e-94 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 2e-14 | FAR1 family protein |
Publications ? help Back to Top | |||
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