PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25262.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 428aa    MW: 47050 Da    PI: 5.448
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25262.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.7e-13349394655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR +i +++ +L++l+P+     +k  + a++L +AveYIk+Lq
  KHN25262.1 349 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVEYIKDLQ 394
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.186343393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-15346398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-13347398No hitNo description
Gene3DG3DSA:4.10.280.101.9E-14348398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9349394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-14349399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MESDLRQHPP MFLDHHHQQQ QMNSGLTRYR SAPSSYFSSI IDREFYEHVF NRPSSPETER  60
MLTRFVDSLG GGDAADADAE DSLANTQNPP TTVVAVKEEV NHQPQDVTSM NNEPLVLQQQ  120
QQQQSNNMNN YGSSGTQNFY QSTGRPPLPN QMKTGRGSSS SLIRHGSSPA GLFSNMNIDT  180
GYAAVRGMGT MGAAAANNTT EEANFSPATR MKNATNFSSG LMSSRPGIGN KSNTQNNAEN  240
EGFAESQGNE FIPAGFPVGP WDDSAIMSDN MTGLKRFRDE DVKPFSGLNA PESQNETGGQ  300
QPSSSALAHQ LSLPNTSAEM AAIEKFLQLS DSVPCKIRAK RGCATHPRSI AERVRRTKIS  360
ERMRKLQDLV PNMDKQTNTA DMLDLAVEYI KDLQNQVEGP PFTGMMEDGV SWKMEIFIFA  420
SSRFSNNV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25262.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311180.0KT031118.1 Glycine max clone HN_CCL_179 bHLH transcription factor (Glyma11g13960.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028194773.10.0transcription factor bHLH122-like
RefseqXP_028194774.10.0transcription factor bHLH122-like
TrEMBLA0A445HL090.0A0A445HL09_GLYSO; Transcription factor bHLH122 isoform B
STRINGGLYMA12G05930.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.18e-62bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]