PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN25249.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 341aa MW: 38460 Da PI: 7.6474

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN25249.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	6.9e-05	185	204	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ KHN25249.1 185 FPCPLCFKTFNRYNNMQMHM 204 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.515	185	212	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.0E-5	185	204	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	187	207	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.68E-5	251	289	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.5E-5	255	289	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MTNSYTSNDL NFWLDLNSPC LLSSPSPSSI NPPFYFPSNY HNSNNYTSAI SSNTHHQFQP 60 SPPQRKALPL LHPRHEEEED LESSFSVMEV DKKKKELSSS SSFLDEEDAA VTVALHLGLP 120 STSIASSADL ASSSLYSTEA SSDKEEEEEK VVLTDASGLL LSNRINRGQY WIPTSSQILI 180 GPTQFPCPLC FKTFNRYNNM QMHMWGHGSQ YRKGPESLRG TQPTAMLRLP CYCCAPGCKN 240 NIDHPRAKPL KDFRTLQTHY KRKHGTKPFV CRKCCKAFAV RGDWRTHEKN CGKRWYCSCG 300 SDFKHKRSLK DHIKAFGYGH TACGNDCNLD QDDDQVGSEI E

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN25249.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	1e-157	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014620008.1	0.0	zinc finger protein WIP2
Refseq	XP_028194157.1	0.0	zinc finger protein WIP2-like
Swissprot	Q8W031	1e-122	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A0A445HL27	0.0	A0A445HL27_GLYSO; Zinc finger protein WIP5
TrEMBL	I1LQI8	0.0	I1LQI8_SOYBN; Uncharacterized protein
STRING	GLYMA12G06080.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-112	C2H2 family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]