PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN25188.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRF | ||||||||
Protein Properties | Length: 334aa MW: 37025.2 Da PI: 7.3429 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 60.8 | 2.1e-19 | 136 | 178 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++g+ C+rH+hrgr+rsrk++e+ KHN25188.1 136 DPEPGRCRRTDGKKWRCSKDTVAGH--CDRHMHRGRNRSRKPVEQ 178 79*********************96..***************997 PP | |||||||
2 | QLQ | 55.8 | 1.4e-19 | 77 | 112 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 F+ aQ+q+L+ Q+l+++y++a++PvPpeLl++i+k KHN25188.1 77 CFSFAQWQELELQALIFRYMLAGAPVPPELLLPIKK 112 6*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.3E-11 | 76 | 112 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.94 | 77 | 112 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.6E-14 | 78 | 110 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 17.008 | 136 | 178 | IPR014977 | WRC domain |
Pfam | PF08879 | 5.0E-16 | 137 | 177 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MDLQLKQWRN QHESEQEQEH YSPNMAKFLS QQQHPPPFPS ALPLFVPEQP NTKVSTLSAF 60 SDSTLPSSPR FPRMESCFSF AQWQELELQA LIFRYMLAGA PVPPELLLPI KKSFLQLYHP 120 PNLLESGYYW RREALDPEPG RCRRTDGKKW RCSKDTVAGH CDRHMHRGRN RSRKPVEQRE 180 GSLSAIDSVS SSHSASFNLL HLGQSSAVAK SDSKSLSRNR DHVDGDGKSN GHVLRHFFDD 240 WPRTLQEPDN GESNGSQNNN SGKCLSMSTP GIDPSDVSLK LTTGYGEDAC QAASVGGPLA 300 EALRSSTTSS TSSPTSVLLQ LPPSSACETS FIST |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN25188.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003537047.1 | 0.0 | growth-regulating factor 3 | ||||
Refseq | XP_028183856.1 | 0.0 | growth-regulating factor 3-like | ||||
TrEMBL | A0A0B2QZH0 | 0.0 | A0A0B2QZH0_GLYSO; Uncharacterized protein | ||||
STRING | GLYMA10G07790.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7895 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 1e-63 | growth-regulating factor 4 |
Publications ? help Back to Top | |||
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