PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25188.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 334aa    MW: 37025.2 Da    PI: 7.3429
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25188.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC60.82.1e-19136178145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRCs+++++g+  C+rH+hrgr+rsrk++e+
  KHN25188.1 136 DPEPGRCRRTDGKKWRCSKDTVAGH--CDRHMHRGRNRSRKPVEQ 178
                 79*********************96..***************997 PP

2QLQ55.81.4e-1977112237
         QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  F+ aQ+q+L+ Q+l+++y++a++PvPpeLl++i+k
  KHN25188.1  77 CFSFAQWQELELQALIFRYMLAGAPVPPELLLPIKK 112
                 6*********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.3E-1176112IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.9477112IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-1478110IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166717.008136178IPR014977WRC domain
PfamPF088795.0E-16137177IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDLQLKQWRN QHESEQEQEH YSPNMAKFLS QQQHPPPFPS ALPLFVPEQP NTKVSTLSAF  60
SDSTLPSSPR FPRMESCFSF AQWQELELQA LIFRYMLAGA PVPPELLLPI KKSFLQLYHP  120
PNLLESGYYW RREALDPEPG RCRRTDGKKW RCSKDTVAGH CDRHMHRGRN RSRKPVEQRE  180
GSLSAIDSVS SSHSASFNLL HLGQSSAVAK SDSKSLSRNR DHVDGDGKSN GHVLRHFFDD  240
WPRTLQEPDN GESNGSQNNN SGKCLSMSTP GIDPSDVSLK LTTGYGEDAC QAASVGGPLA  300
EALRSSTTSS TSSPTSVLLQ LPPSSACETS FIST
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25188.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537047.10.0growth-regulating factor 3
RefseqXP_028183856.10.0growth-regulating factor 3-like
TrEMBLA0A0B2QZH00.0A0A0B2QZH0_GLYSO; Uncharacterized protein
STRINGGLYMA10G07790.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78953242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.11e-63growth-regulating factor 4
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]