PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25184.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 234aa    MW: 25354.4 Da    PI: 8.0454
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25184.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601247.4e-39411421101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrr+C+++C++ap+f  +q ++kfa+vhk+FGasnv+kll+++p ++r++a +++ yeA+ar++dPvyG+v++il+lqqq+++l+aela+l+
  KHN25184.1  41 PCGACKFLRRRCVEGCIFAPHFGTDQgAAKFAAVHKVFGASNVSKLLSNIPVNRRNEASTTISYEAQARLSDPVYGCVSTILALQQQVATLQAELAMLQ 139
                 7***********************9989*********************************************************************99 PP

      DUF260  99 eel 101
                 ++l
  KHN25184.1 140 TQL 142
                 875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.46140142IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-3941139IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAESQGGSGA SGSRRRGIAS RRAMAAQTQD EAMVESSPTT PCGACKFLRR RCVEGCIFAP  60
HFGTDQGAAK FAAVHKVFGA SNVSKLLSNI PVNRRNEAST TISYEAQARL SDPVYGCVST  120
ILALQQQVAT LQAELAMLQT QLMNSRFAYA SAFQTTQLQQ PNMNTGALQP AYSNNSCAST  180
NLLNLSTFNN NPSFVLEMDT APSSSLEPLQ LTRLSQCKEE DEEENKTQKA FNHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-37361481115LOB family transfactor Ramosa2.1
5ly0_B1e-37361481115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25184.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-104AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028184623.11e-156LOB domain-containing protein 20-like
SwissprotQ9SRV35e-72LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A0B2QYW11e-172A0A0B2QYW1_GLYSO; LOB domain-containing protein 20
STRINGGLYMA02G27230.11e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-56LOB domain-containing protein 20
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]