PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25109.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 303aa    MW: 34543.1 Da    PI: 5.033
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25109.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS26.38.5e-0926530367105
        GRAS  67 setseknsseelaalklfsevsPilkfshltaNqaIlea 105
                  + +e +s ee+ a++ ++ vsP+++f+h+taNqaIlea
  KHN25109.1 265 HKRPEPKSGEEFLAFTDLYRVSPYYQFAHFTANQAILEA 303
                 33334458888899999********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142448.2E-211461IPR029472Gag-polypeptide of LTR copia-type
PfamPF035142.9E-6265303IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MPAVMDDANP FFIHSLDNPG LMLVSHLLLG DNYSSWKKAM EMSLLGKNKF GFVDGSIVEP  60
ALGHAYHATW HRNDDIVASW LLNSLLKKDA SSMSVSSYYA KMRSIWESQL ELKPAHTCTG  120
NGIKPWCEYA QLEYAMHFLM GLNEAYFWIR GQILSMDPFT SITKMIFSLV VQEEKQTEGN  180
WVPSPLLNHK SPYQVDRDVI FHEIIFPFHS NVVDQELPEF FNDFVIPLPI SEHSSSVPDF  240
EDAHPTIDDS VISLGTTAER SSREHKRPEP KSGEEFLAFT DLYRVSPYYQ FAHFTANQAI  300
LEA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25109.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-36AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025981688.19e-70uncharacterized protein LOC112999585
RefseqXP_028201736.19e-70uncharacterized protein LOC114385894
TrEMBLA0A0B2QYL50.0A0A0B2QYL5_GLYSO; Uncharacterized protein
STRINGGLYMA07G11865.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3033
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]