PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN25102.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 384aa MW: 45018.3 Da PI: 9.3973 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 62.4 | 1.4e-19 | 49 | 145 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA evGF+v++s++ k ++gei+ + + Cs++g+++e+++ + + r r++tr gC+ak++ k+++dgk++v ++ + H H+la KHN25102.1 49 NFYTTYAVEVGFNVCRSTEVKY-KDGEIKFKYYLCSRQGFKAENRTIsaflvdekRMPKIRWRKQTREGCNAKIVFKRTTDGKYKVFQFYEGHKHALA 145 6****************99998.8899***************9988799*998877788889**********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.5E-17 | 49 | 145 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.0E-16 | 253 | 313 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 384 aa Download sequence Send to blast |
ISYNDVNVTT PSKGLNDHVY TLQGWVPKCD KQLKPIVGNM FDTLEEGNNF YTTYAVEVGF 60 NVCRSTEVKY KDGEIKFKYY LCSRQGFKAE NRTISAFLVD EKRMPKIRWR KQTREGCNAK 120 IVFKRTTDGK YKVFQFYEGH KHALATPTKK QFLKSARNVK NVHKNLLLCF DKANIRNYDN 180 IGWTKKDLQN YSTGLKGLIK DTDDHMFVEN FRRKHEINNS FYYDLQVDDE GRLKYVFWAD 240 GLCRKNYSLF GGVVSFDTTY DTNKYCMVFA PFNGINRYQH SITFGVALLA NEKAESFEWL 300 FETFLKSMGG HKPIKVGASL NANIDFHSPF KSYIWNSESS KEFELTWKTI ICDFKLEENG 360 WLSQIYDMRS MWIPAYFKNK FLAE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN25102.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024626623.1 | 1e-157 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_024632184.1 | 1e-156 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0B2QZL7 | 0.0 | A0A0B2QZL7_GLYSO; Protein FAR1-RELATED SEQUENCE 5 (Fragment) | ||||
STRING | GLYMA07G11941.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14928 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-50 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|