PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25089.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family BBR-BPC
Protein Properties Length: 282aa    MW: 31293.1 Da    PI: 10.4484
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25089.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind351.81.5e-10712821301
   GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerd..........maflqrdkalaernkalverdnkllalllve 88 
                 md d+  + rn+gyyepa+s+k++lglqlmss++e+      + + l+++++a+++rd          +++ +rd+++++        ++k++++++++
  KHN25089.1   1 MDGDNGLNiRNWGYYEPATSFKSHLGLQLMSSLPEKPLIGGRNAVVLAGTDGAFHHRDiggmpqatypIEY-MRDTWISQ--------RDKYMNMIPTN 90 
                 888888888*************************999887777777********************99999.9*******........789******99 PP

   GAGA_bind  89 nslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaders 187
                 ++        ++ +++t+s++++q++     + +  +      +e++p+eea+ ++k + ++kkrq +k+pk++kakk+k+ ++++k++++++   +r+
  KHN25089.1  91 HN--------YGGIPETSSAHQIQMI-----QAPELP------KEEKPVEEAPVVKKANGTRKKRQGPKVPKSPKAKKPKRVPRAPKDENAPAV--QRA 168
                 97........999************3.....333223......3458999999999999**********************9999988888777..79* PP

   GAGA_bind 188 kaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLk 286
                 + +kk++++v+ng+++D+s++P+PvCsCtGa++qCYkWG+GGWqSaCCtt +SvyPLP+stkrrgaRiagrKmS gafkk+LekLaaeGy++snp+DL+
  KHN25089.1 169 RVPKKTTEIVINGIDMDISRIPIPVCSCTGATQQCYKWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLR 267
                 *************************************************************************************************** PP

   GAGA_bind 287 dhWAkHGtnkfvtir 301
                 ++WAkHGtnkfvtir
  KHN25089.1 268 TYWAKHGTNKFVTIR 282
                 **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012268.9E-1661282IPR010409GAGA-binding transcriptional activator
PfamPF062174.6E-1141282IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDGDNGLNIR NWGYYEPATS FKSHLGLQLM SSLPEKPLIG GRNAVVLAGT DGAFHHRDIG  60
GMPQATYPIE YMRDTWISQR DKYMNMIPTN HNYGGIPETS SAHQIQMIQA PELPKEEKPV  120
EEAPVVKKAN GTRKKRQGPK VPKSPKAKKP KRVPRAPKDE NAPAVQRARV PKKTTEIVIN  180
GIDMDISRIP IPVCSCTGAT QQCYKWGSGG WQSACCTTGM SVYPLPMSTK RRGARIAGRK  240
MSIGAFKKVL EKLAAEGYNF SNPIDLRTYW AKHGTNKFVT IR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25089.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5024310.0AF502431.1 Glycine max GAGA-binding protein (gbp) mRNA, complete cds.
GenBankBT0933840.0BT093384.1 Soybean clone JCVI-FLGm-17A2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528993.10.0protein BASIC PENTACYSTEINE2
RefseqXP_006583485.10.0protein BASIC PENTACYSTEINE2
RefseqXP_006583486.10.0protein BASIC PENTACYSTEINE2
RefseqXP_014633402.10.0protein BASIC PENTACYSTEINE2
RefseqXP_028239996.10.0protein BASIC PENTACYSTEINE2-like
RefseqXP_028239997.10.0protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD07e-92BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A0B2QYJ90.0A0A0B2QYJ9_GLYSO; Protein BASIC PENTACYSTEINE1
TrEMBLI1KJA40.0I1KJA4_SOYBN; Uncharacterized protein
STRINGGLYMA07G12150.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.33e-86basic pentacysteine 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]