PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25023.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 460aa    MW: 51312.4 Da    PI: 4.3576
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25023.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-16205252253
         AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                 +ykGVr +k +g+W+AeIrd +     + +r++lg+f taeeA +a++  r+++
  KHN25023.1 205 KYKGVRMRK-WGKWAAEIRDpF-----KgTRIWLGTFSTAEEASQAYETRRLEF 252
                 8******99.**********55.....45******************9777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.203205262IPR001471AP2/ERF domain
SMARTSM003801.0E-18205259IPR001471AP2/ERF domain
CDDcd000181.31E-22205245No hitNo description
SuperFamilySSF541714.32E-16205251IPR016177DNA-binding domain
PfamPF008471.5E-9205252IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-21205252IPR001471AP2/ERF domain
PRINTSPR003671.2E-9206217IPR001471AP2/ERF domain
PRINTSPR003671.2E-9228244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MRNPLKEEEQ EIYVVLVLFG SSDWSFVEAR VRLRLCLLHA TLVGVEFCCF DEFEVKKDML  60
WNSGLLWRLS DKKILCFLPP LESGSHLMGF DPIFFTMVEP LNQSTPRTKK MKHKRNPIHD  120
SKMTRKLRII CNDPDATDSS SDEDEYFGNV RKMKRTVLEI ALPPVPVNPV VADETSTEST  180
NNDELNQTKR VMAKTPSVKR QSCGKYKGVR MRKWGKWAAE IRDPFKGTRI WLGTFSTAEE  240
ASQAYETRRL EFEVMAKALS DEKSNNGSSN NNVVASAETE TVAAPENNSS NYCVSSAAGS  300
VSDSKSAFMD ESESVLSHTS PSSVLELDTS ASNLIGSGKV SSNEIVETKG LEAEVAETKS  360
LAAEFAELEI QDLSMLNVPS PSAVAAATSE YELDLLAFDS FKYGFDYEHG FDDDFAALED  420
IHICSFDDNE PSELPDYDFD DFGADEFAGW IEEPLNIPCV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-132042461356Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352720.0AC235272.1 Glycine max strain Williams 82 clone GM_WBb0046N03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028245218.10.0ethylene-responsive transcription factor ERF118-like
RefseqXP_028245219.10.0ethylene-responsive transcription factor ERF118-like
TrEMBLA0A0B2QYX40.0A0A0B2QYX4_GLYSO; Ethylene-responsive transcription factor ERF118
STRINGGLYMA08G30716.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-30ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]