PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN24804.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 120aa MW: 13562.5 Da PI: 5.2656 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 33.1 | 1.8e-10 | 76 | 114 | 2 | 40 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegk 40 fY+eYA+++GF +r+ + ++s+r+g+i r++ C+keg+ KHN24804.1 76 FYDEYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGY 114 9************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-8 | 76 | 114 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MAELWKAKIL PYKQAIAAYG TAIVGLPSQI AYVDPNEGCR VLESSSWGEL GICEDHAIQE 60 PYEGMEFESE DAAKLFYDEY ARRLGFVMRV MSCRRSERDG RILARRLGCN KEGYCVSIRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN24804.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 3e-93 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014630091.1 | 2e-60 | protein FAR1-RELATED SEQUENCE 2 isoform X1 | ||||
Refseq | XP_014630092.1 | 2e-60 | protein FAR1-RELATED SEQUENCE 2 isoform X1 | ||||
Refseq | XP_014630093.1 | 2e-60 | protein FAR1-RELATED SEQUENCE 2 isoform X1 | ||||
Refseq | XP_028228554.1 | 2e-60 | protein FAR1-RELATED SEQUENCE 2-like isoform X2 | ||||
TrEMBL | A0A0B2QXS2 | 6e-83 | A0A0B2QXS2_GLYSO; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A445KYQ6 | 1e-82 | A0A445KYQ6_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform B | ||||
STRING | GLYMA04G12273.1 | 9e-60 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 3e-35 | FAR1 family protein |
Publications ? help Back to Top | |||
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