PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN24735.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 911aa MW: 100733 Da PI: 7.4668 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63 | 4.9e-20 | 336 | 436 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+kvl+ sd+++ grlvlpk +ae++ +++ e++ l+++d +g++W++++++ +++s++yvl+ G +a +L++gD+v+F++++ +++lv++ KHN24735.1 336 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGVPLRMQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQAMQLCAGDTVTFSRID-PGGKLVMG 432 99**************************666778999***************9989999999***9.********************887.78888888 PP EE-S CS B3 96 vfrk 99 ++++ KHN24735.1 433 FRKA 436 7765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-30 | 332 | 443 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.27E-20 | 334 | 436 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.01E-23 | 334 | 435 | No hit | No description |
Pfam | PF02362 | 1.6E-16 | 336 | 435 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.532 | 336 | 437 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.5E-23 | 336 | 437 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.611 | 597 | 647 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 8.9E-11 | 602 | 644 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 911 aa Download sequence Send to blast |
MGSDICIVNG LGTHEWRKGW PLRSGGFAQL CCKCGFMEEW KGDILDRLSA YENSVFCNKF 60 HRQQTGWREC NFCNKPIHSG CIVSRSLFGY LDFGGIGCVS CVNTTQLSMM RNTENPNVSV 120 SSIKNNASDR HSAHFDGRLL VGGVDEGKLM QFCKIIEASE SSHWNHAQSD GIIAHHGQNN 180 QEAKCSFREG DIGFSNVRKP SVQSLTFATL ENNRSTWEIK NMHESNAQPS FSMYLGNASG 240 NDSVPPSAGE AVEGRLEGKT SPPFQRSRPI CPKPLKSGLT MNVETDKGAI SQSRVARPPA 300 DGRGKNQLLP RYWPRITDQE LERLAGDLKS TVVPLFEKVL SASDAGRIGR LVLPKACAEA 360 YFPPISQSEG VPLRMQDVKG NEWTFQFRFW PNNNSRMYVL EGVTPCIQAM QLCAGDTVTF 420 SRIDPGGKLV MGFRKASNST DTQDASTSAQ SNSAKGTISS GTENLPSGSN HANLLHSLTG 480 NVETHLNGHT EHLHLGTGTA GLLKTENNEM TNSSSPQQQI SVLEKKRTRN IGPKSKRLLI 540 DNEDAMELKL TWEEAQDLLR PPPSVKPNIV TIEDQVFEEY DEPPVFGKRT IFSACSSGGK 600 EQWAQCDDCS KWRKLPVDAL LPPKWTCSEN VWDSSRCSCS VPEELSSKEL ENLLKTNKDF 660 KKRRIAESSK SIQEHEASGL DALASAAVLG ENLVDTAESS AGATTKHPRH RPGCSCIVCI 720 QPPSGKGRHK PTCTCNVCMT VKRRFKTLML RKKKRQSERE ADTAQKDQTL LKDEPDTNGA 780 PRDDTSRLEK EVGLNKSQHQ VGESSTGQID LNSHPNREDM QVETTGLNMS SHLEPATNHT 840 VGEFMDKNDL RRSFNNEVQT GQNSSLHTPP QSSGEGQRYF SDGRCFASIV WNQERKDEVH 900 SQPNQSQNNL S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 6e-69 | 314 | 443 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 741 | 752 | KRRFKTLMLRKK |
2 | 741 | 754 | KRRFKTLMLRKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN24735.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-160 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006591264.2 | 0.0 | B3 domain-containing transcription repressor VAL1 | ||||
Refseq | XP_014619648.1 | 0.0 | B3 domain-containing transcription repressor VAL1 | ||||
Refseq | XP_014619649.1 | 0.0 | B3 domain-containing transcription repressor VAL1 | ||||
Refseq | XP_014619650.1 | 0.0 | B3 domain-containing transcription repressor VAL1 | ||||
Refseq | XP_028189970.1 | 0.0 | B3 domain-containing transcription repressor VAL1-like | ||||
Refseq | XP_028189971.1 | 0.0 | B3 domain-containing transcription repressor VAL1-like | ||||
Refseq | XP_028189972.1 | 0.0 | B3 domain-containing transcription repressor VAL1-like | ||||
Swissprot | Q8W4L5 | 0.0 | VAL1_ARATH; B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | A0A0B2QTH0 | 0.0 | A0A0B2QTH0_GLYSO; B3 domain-containing transcription repressor VAL1 | ||||
STRING | GLYMA11G31234.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10323 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |