PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN24637.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 225aa MW: 25353.7 Da PI: 4.4325 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00028 | 64 | 86 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C k+F++ L H +H KHN24637.1 64 YKCETCEKVFRSYQALGGHRASH 86 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 11.4 | 0.00099 | 125 | 147 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++F + L H rtH KHN24637.1 125 HECPVCFRVFASGQALGGHKRTH 147 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.5E-11 | 63 | 88 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.13E-5 | 63 | 94 | No hit | No description |
PROSITE profile | PS50157 | 10.201 | 64 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.029 | 64 | 86 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.61E-5 | 121 | 148 | No hit | No description |
Pfam | PF13912 | 8.7E-11 | 125 | 147 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.22 | 125 | 147 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.286 | 125 | 147 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 127 | 147 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MLSRDKWKEN NKLLYDNKVE IAEYNDDYDD EEDEDEEEEE DEEIYESEEE LKSVKKSNKV 60 RGRYKCETCE KVFRSYQALG GHRASHKKIK LNNCENKNKN NNNNNDDEAE QLEVQHVVVV 120 EKKIHECPVC FRVFASGQAL GGHKRTHVIG SSTAAATTTA TAITTVSVRN SVATVSVRTT 180 STARVVGDSL IDLNLPAPMD DDEEEEGNVS QFEDSAVSDA EFVKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN24637.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096580 | 0.0 | BT096580.1 Soybean clone JCVI-FLGm-20J22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001239999.1 | 1e-163 | zinc finger protein ZAT9-like | ||||
Refseq | XP_028224271.1 | 1e-163 | zinc finger protein ZAT9-like | ||||
TrEMBL | A0A0B2QYA9 | 1e-163 | A0A0B2QYA9_GLYSO; Zinc finger protein ZAT4 | ||||
TrEMBL | A0A445L733 | 1e-162 | A0A445L733_GLYSO; Zinc finger protein ZAT9 | ||||
TrEMBL | C6TG36 | 1e-162 | C6TG36_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G03950.2 | 1e-163 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-23 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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