PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN24272.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 371aa    MW: 40541.9 Da    PI: 4.3343
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN24272.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.5e-17109157254
         AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                 +ykGVr +k +g+W+AeIrd +     + +r++lg+f taeeA +a+ a r+++e
  KHN24272.1 109 KYKGVRMRK-WGKWAAEIRDpF-----KgARIWLGTFSTAEEASQAYNARRLEFE 157
                 8******99.**********55.....45******************99888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.25E-23109156No hitNo description
PfamPF008478.3E-10109158IPR001471AP2/ERF domain
SMARTSM003801.2E-18109171IPR001471AP2/ERF domain
PROSITE profilePS5103219.717109166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-21109156IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-16109156IPR016177DNA-binding domain
PRINTSPR003671.2E-9110121IPR001471AP2/ERF domain
PRINTSPR003671.2E-9132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MVEPLNQSTP KMKKIKHKPN SIHNSKITRK LRIICNDPNA TDSSSDEDEH FRNVRKMKRT  60
VVEIALPPVS VNPVVADETS TESTNNDELN KMKRVLGKTP TVKRQSCGKY KGVRMRKWGK  120
WAAEIRDPFK GARIWLGTFS TAEEASQAYN ARRLEFEAMA KALSDEKSNN GSNSSSNNNV  180
VASAETVAAT ENNSSNYCVS SAAGSVSDSK SASMDESESV LSLTSPSSVL ELDTSAFNLI  240
GSGKVSSNEV VETKGLEAEV AETKNLAAEF AELEMLEMPD LSMLNVPSPS AVAATAAAPS  300
EFELDLLAFV DSEYGFHDEH DFDDDLAALE DFHICGFDDN EPSELPDYDF DDFGADEFAG  360
WIEEPLNIPC V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-121081501356Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN24272.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352720.0AC235272.1 Glycine max strain Williams 82 clone GM_WBb0046N03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573237.10.0ethylene-responsive transcription factor ERF118
RefseqXP_014629548.10.0ethylene-responsive transcription factor ERF118
RefseqXP_028223074.10.0ethylene-responsive transcription factor ERF118-like
TrEMBLA0A0B2QXC80.0A0A0B2QXC8_GLYSO; Ethylene-responsive transcription factor ERF118
TrEMBLK7K2M20.0K7K2M2_SOYBN; Uncharacterized protein
STRINGGLYMA01G20383.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-32ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]