PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN24219.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 376aa MW: 41667.8 Da PI: 6.9639

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN24219.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44	3.9e-14	181	227	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L KHN24219.1 181 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 227 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.136	178	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-11	181	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.9E-15	182	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.37E-15	182	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-13	184	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.76E-5	191	230	No hit	No description
CDD	cd04873	1.09E-5	263	314	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MKKELEDQGQ CSSLPIDTKN NIQSYQEHLL QQQMQQNSDI FGGGASRGLM FPPEVSPTLQ 60 QQSWSMPPVH SFNSNPVHYI NNNNTNPVHH HHEQAPFLVP PPTTPSPYAS FFSSRRVVPS 120 LQFAYEGPSS HLDHHHHLRI ISDTLGPMVQ PGSAAPFGLQ AELGKMTAQE IMEAKALAAS 180 KSHSEAERRR RERINNHLAK LRSLLPNTTK TDKASLLAEV IQHVKELKRQ TSLIAETSPV 240 PTESDELTVD AVDEDGKFVI KASLCCEDRS DLLPDLIKTL KALRLRTLKA EITSLGGRVK 300 NVLVITGDED NSNSNTHNGE QSMQQQQQQF CISSIQEALK AVMEKSGGGD ESASGNVKRQ 360 RTTTNNNINI LEQRSL

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MKKELEDQGQ CSSLPIDTKN NIQSYQEHLL QQQMQQNSDI FGGGASRGLM FPPEVSPTLQ  60
QQSWSMPPVH SFNSNPVHYI NNNNTNPVHH HHEQAPFLVP PPTTPSPYAS FFSSRRVVPS  120
LQFAYEGPSS HLDHHHHLRI ISDTLGPMVQ PGSAAPFGLQ AELGKMTAQE IMEAKALAAS  180
KSHSEAERRR RERINNHLAK LRSLLPNTTK TDKASLLAEV IQHVKELKRQ TSLIAETSPV  240
PTESDELTVD AVDEDGKFVI KASLCCEDRS DLLPDLIKTL KALRLRTLKA EITSLGGRVK  300
NVLVITGDED NSNSNTHNGE QSMQQQQQQF CISSIQEALK AVMEKSGGGD ESASGNVKRQ  360
RTTTNNNINI LEQRSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	191	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN24219.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006573268.1	0.0	transcription factor bHLH30
Refseq	XP_006573269.1	0.0	transcription factor bHLH30
Refseq	XP_028234163.1	0.0	transcription factor bHLH30-like
Refseq	XP_028234164.1	0.0	transcription factor bHLH30-like
Swissprot	Q9S7Y1	1e-111	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A0B2QVZ4	0.0	A0A0B2QVZ4_GLYSO; Transcription factor bHLH30
TrEMBL	K7K2S1	0.0	K7K2S1_SOYBN; Uncharacterized protein
STRING	GLYMA01G22530.4	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4589	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	5e-84	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]