PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN24194.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 691aa    MW: 74140.6 Da    PI: 6.889
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN24194.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.2e-16465511455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  Er+RRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  KHN24194.1 465 VHNLSERKRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 511
                 6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.89E-17457515No hitNo description
Gene3DG3DSA:4.10.280.107.3E-20458519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-20458521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.216461510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-13465511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-17467516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MPLYELYRLA REKLGKETTS TRAPDQCSSP ENDFFELVWE NGQISSQGQS SRVRRSPSCK  60
SLPSHCLPSH SPKARDKDVG YGSYTRLGKF GDLDSGLNEI PMSVPSSEVD FCQDEDVLPW  120
LDYPSIDGSL QQEYGSDFLP ASNSFTLLDK KSNGNMAFRD SQKTSEEQGN VFKGSSAGQV  180
ETARPKASST SQLFPPSLHQ CQTSFVSSRS RASDITENNN TSNANQDASY GKITHILSSS  240
SDFSNAKVQK CDPPMNSNGS SSTIMNFSHF ARPAAMVRAN LHSVGLKSGL SSSRSDSMEM  300
KNKGAAATSS NPPESILVDS SVECLKEPII QCQQVVEQSK ADVNSLLPKS VEQNAVPSKQ  360
SEPAGKESAA KIDLIPNQVP GDNGTKGQTA AEKSKEPAVA SSSVCSGNGT DQGSEEPNQN  420
LKRKRKDTDD SECHSEDVEE ESAGAKKTAG GRGGAGSKRS RAAEVHNLSE RKRRDRINEK  480
MRALQELIPN CNKVDKASML DEAIEYLKTL QLQVQIMSMG AGLYMPPMML PAGMQHMHAP  540
HMAPFSPMGV GMHMGYGMGY GMGMPDMNGG SSRFPMIQVP QMQGTHIPVA HMSGSTAFHG  600
MARANPPGFG LPGQGHPMPM PRAPMFPFSG GQMPNVDPQV KQSTGGRDST SQMPTQCEAA  660
AVGFEQSTLA HNNGHATKAN DNGSVNPGTG R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1469474ERKRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN24194.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311310.0KT031131.1 Glycine max clone HN_WYQ_57 bHLH transcription factor (Glyma10g28290.3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028186133.10.0transcription factor PIF3-like
RefseqXP_028186134.10.0transcription factor PIF3-like
TrEMBLA0A0B2QVW10.0A0A0B2QVW1_GLYSO; Transcription factor PIF3
STRINGGLYMA10G28290.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-47phytochrome interacting factor 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]