PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN24054.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 962aa    MW: 108037 Da    PI: 5.2761
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN24054.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1170.52.6e-53141293117
        CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100
                 +e k+rwlk+ e++ iL n+++ e+t++++++p  gsl+L+nr+++r+frkDG++w+kkkdgktv E+he+LKvg+ve+l+cyYah+een+tfqrr+yw
  KHN24054.1  14 QEaKRRWLKPVEVLYILRNHDQCEFTHQPPHQPAGGSLLLFNRRIMRFFRKDGHNWRKKKDGKTVGEAHERLKVGNVEILNCYYAHGEENRTFQRRSYW 112
                 56699********************************************************************************************** PP

        CG-1 101 lLeeelekivlvhylev 117
                 +Le e+++ivlvhy+e+
  KHN24054.1 113 MLEPEYDHIVLVHYRET 129
                 ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.259135IPR005559CG-1 DNA-binding domain
SMARTSM010763.3E-6912130IPR005559CG-1 DNA-binding domain
PfamPF038593.3E-4715128IPR005559CG-1 DNA-binding domain
PfamPF018339.2E-7386457IPR002909IPT domain
Gene3DG3DSA:2.60.40.105.1E-6386458IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.38E-16386470IPR014756Immunoglobulin E-set
CDDcd001022.71E-4386470No hitNo description
Gene3DG3DSA:1.25.40.204.1E-15581675IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.141581673IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.12E-15585675IPR020683Ankyrin repeat-containing domain
CDDcd002042.69E-13601673No hitNo description
PfamPF127962.4E-8602675IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.06614646IPR002110Ankyrin repeat
SMARTSM002480.0038614643IPR002110Ankyrin repeat
SMARTSM002481500653682IPR002110Ankyrin repeat
SMARTSM0001568731753IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.078732761IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.78E-6785844IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000156.7792814IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.675793822IPR000048IQ motif, EF-hand binding site
PfamPF006120.024796813IPR000048IQ motif, EF-hand binding site
SMARTSM000157.2E-4815837IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.304816840IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-4818837IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    Send to blast
MPPGLEYNID DLFQEAKRRW LKPVEVLYIL RNHDQCEFTH QPPHQPAGGS LLLFNRRIMR  60
FFRKDGHNWR KKKDGKTVGE AHERLKVGNV EILNCYYAHG EENRTFQRRS YWMLEPEYDH  120
IVLVHYRETS EGKSKSEHVT QLSSGSSPVF SQSHSSYTTH NPGTASMFGD SCEPNQKFSS  180
SGSLEDTSEA QALRQLEEQL SLNEDIFNEI ALDLIPGQDQ RVVYKQDNSV ALSGPNDPGQ  240
PCDGYNGRED DSGTYYHDFL DDCPGGNEKT IYWTEVLESC KPLSVTKLPD QHAYDAIENG  300
KSLFSSGRGM IANREKNQWL NSNSNNVENS VFLFPQDIGV KFPPYSMVET PGTNYDYYET  360
CFDQFQNQEP LGVDSSFTVV QKQKFTIRAV SPEYCYATET TKVIIIGSFL CHDSDSTWAC  420
MFGDVEVPAE IIQDGVICCE APSYLLGKVN LCVTSGNRVP CSEVRGFEFR NKTTSCTRCN  480
SLETEGSKSL EDLLLLVRFA EMLLSASTTK DDRIESGSYL STEQKDDDDS WSHIIIDTLL  540
DGTRTSSDTV NWLLEELLKD KLQLWLSNRR DEGTGCSFSR KEQGIIHMIS GLGFEWALSP  600
ILSCGVNINF RDINGWTALH WAARFGREKM VASLIASGAS AGAVTDPSSQ DPTGKTAASI  660
AASHGHKGLA GYLSEVDLTS HLSSLTLEES ELSKGSSELE AELTVSSVSK ENLVASEDQV  720
SLQAFLDAVR NAAQAAARIQ AAFRAHSFRK RKEREAAADA GLDGYCIDAG SIDNNISVLS  780
AVSKLSSQSC RDYNLAALSI QKKYRGWKGR KEFLALRQKV VKIQACVRGY QVRKQYKLIL  840
WAVGILDKVV LRWRRKRIGI RSVRQEMESN EEESDDEDFL SVFRKEKVNA AIEKALKQVL  900
SMVHSSGARQ QYRRLLLLYR QAKAKTERGS TSDEAPLSTS EEEVSNMEDD DLCQFWETFW  960
PS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN24054.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-179AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552779.10.0calmodulin-binding transcription activator 4
RefseqXP_028212348.10.0calmodulin-binding transcription activator 4-like
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A0B2QVH00.0A0A0B2QVH0_GLYSO; Calmodulin-binding transcription activator 4
TrEMBLK7MP750.0K7MP75_SOYBN; Uncharacterized protein
STRINGGLYMA18G00840.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]