PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23974.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 397aa    MW: 43689.6 Da    PI: 8.5681
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23974.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.21.5e-4099175278
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 C v+gC++dls++++yhrrhkvCe hsk+p+v++ g +qrfCqqCsrfh+l++fDe+krsCr+rL++hn+rrrk+q+
  KHN23974.1  99 CLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGFKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQP 175
                 **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-3195160IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.53996173IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.05E-3897178IPR004333Transcription factor, SBP-box
PfamPF031106.1E-3099172IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDWNLKAPSW DLVDVDKATL QQHRGAMEEQ NRFGVYRMKG EFSVDLKLGH HVGNSGTESA  60
LANKSKDAAA AGVSKMASSP SGSSKRARAI NSTSLTVSCL VDGCNSDLSN CRDYHRRHKV  120
CELHSKTPEV TIGGFKQRFC QQCSRFHSLE QFDERKRSCR KRLDGHNRRR RKPQPEPLSR  180
PGSFLSNYQG TQLLPFSSPH VYPSTAIVSP AWSASLVTSS ADARLHNHNQ QQHHHHQQDL  240
FLGSSHKEGK QVAFLHNNHP STAAALSSQT PPPFPSSSVR HTLLRTDPLS ETCGGARSKM  300
FCESLTTTTT NNNSVHDTTP CALSLLSSSQ THTPGNGLNQ MVQPPPSMSL MQPLGLSLQD  360
NNSLESVDHC SSVYSLASDH GSQCNEAAPQ LFPFQWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-27991721184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154171RKRSCRKRLDGHNRRRRK
2154172RKRSCRKRLDGHNRRRRKP
3155172KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23974.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-144AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028229451.10.0squamosa promoter-binding-like protein 13A isoform X1
TrEMBLA0A0B2QV950.0A0A0B2QV95_GLYSO; Squamosa promoter-binding-like protein 13
STRINGGLYMA04G37391.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-68SBP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]