PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN23952.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 349aa MW: 39333.9 Da PI: 7.2667

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN23952.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.1e-09	174	221	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq KHN23952.1 174 SHSLAERVRREKISERMKVLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 221 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.20E-10	168	225	No hit	No description
SuperFamily	SSF47459	4.58E-17	168	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-16	170	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.79	170	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-6	174	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-10	176	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MAAFSYQYHP FLVDPAFFPN NLNTPNSPPP PLPSQFQQLP HETSSFNVTN QETSCVDQSS 60 KITISDNEPS VTKNLSPQSS MVVDKLETGE QVTQKVNIPV DKKRRTRNGS SFTSNPQSKD 120 TATEGKNKKQ RKNNGGLKEE DKAKEEKKDQ RKCPEEPPTG YIHVRARRGQ ATDSHSLAER 180 VRREKISERM KVLQRLVPGC DKVTGKALML DEIINYVQSL QNQVEFLSMK LASVNPMFYD 240 LATDLDTLLV RPEKLNSMAS PSPLPSMSHC NSPNNQATTF ADTTTMTPTN IFHTTSDYLL 300 DNSVSFFLQG QRPNVLSEED TGSHFWDAED QRQKFLHPYG FSNNLCSFH

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MAAFSYQYHP FLVDPAFFPN NLNTPNSPPP PLPSQFQQLP HETSSFNVTN QETSCVDQSS  60
KITISDNEPS VTKNLSPQSS MVVDKLETGE QVTQKVNIPV DKKRRTRNGS SFTSNPQSKD  120
TATEGKNKKQ RKNNGGLKEE DKAKEEKKDQ RKCPEEPPTG YIHVRARRGQ ATDSHSLAER  180
VRREKISERM KVLQRLVPGC DKVTGKALML DEIINYVQSL QNQVEFLSMK LASVNPMFYD  240
LATDLDTLLV RPEKLNSMAS PSPLPSMSHC NSPNNQATTF ADTTTMTPTN IFHTTSDYLL  300
DNSVSFFLQG QRPNVLSEED TGSHFWDAED QRQKFLHPYG FSNNLCSFH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN23952.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031107	0.0	KT031107.1 Glycine max clone HN_CCL_82 bHLH transcription factor (Glyma06g17420.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003526933.2	0.0	transcription factor bHLH137
Refseq	XP_028236742.1	0.0	transcription factor bHLH137-like
Swissprot	Q93W88	2e-58	BH137_ARATH; Transcription factor bHLH137
TrEMBL	A0A0B2QWE0	0.0	A0A0B2QWE0_GLYSO; Transcription factor bHLH137
TrEMBL	I1KBY8	0.0	I1KBY8_SOYBN; BHLH transcription factor
STRING	GLYMA06G17420.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4182	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	3e-54	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]