PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23866.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 545aa    MW: 61597.2 Da    PI: 5.7351
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23866.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.74.6e-1311765452374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 +e L +cA+ v+ +d+e +++l+++l++++s +g+p+qRl ay++eAL arla+s+s++yk l+++e +    se l+ ++l++e++P+lkf+++ aN 
  KHN23866.1 176 KEMLCTCAKTVAVNDMETTEWLMSELRKMVSVSGNPIQRLGAYMLEALVARLASSGSTIYKVLKCKEPT---GSELLSHMHLLYEICPYLKFGYMSANG 271
                 789*****************************************************************9...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 aI e +++e++vHiiDf+i+qG+QW++L+qa a Rp+ pp++RiTg+++++s   ++  le +g rL+++A++ +vpfef++ +  + +++el++L+++
  KHN23866.1 272 AIAEVMKEESEVHIIDFQINQGIQWVSLIQAVAGRPGAPPKIRITGFDDSTSAyaREGGLEIVGARLSRLAQSYNVPFEFHA-IRAAPTEVELKDLALQ 369
                 *************************************************998899999************************.6888999********* PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 pgEa+aVn++++lh+++de v+++++rd++++l k lsPk+v++veqe+ +n+ +F+ rf+e+++yy a+f+s+++ lpre++eri+vE+++l+re+vn
  KHN23866.1 370 PGEAIAVNFAMMLHHVPDECVDSRNHRDRLVRLAKCLSPKIVTLVEQESHTNNLPFFPRFVETMNYYLAIFESIDVALPREHKERINVEQHCLAREVVN 468
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++acegaer+erhe l+kWr+r+++aGF+p+pl++++++++k l + ++++ y++ee++g+l+lgW+++ L++ +aWr
  KHN23866.1 469 LIACEGAERVERHELLKKWRSRFTMAGFTPYPLNSFVTCSIKNLQQSYQGH-YTLEERDGALCLGWMNQVLITSCAWR 545
                 *************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.412149526IPR005202Transcription factor GRAS
PfamPF035141.6E-128176545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MQMSQKHKMS YDSSRFSIEP AQNLGSCCFL QSGNLDYYSS SDNGSHATYP SVCIFEQYCT  60
LESSTNNNFP SLNSPSTVSF SPNNSPVSKL QSKPNVLSSQ NSLEIVNESL ENKSFLTLND  120
DELRHKIREL ESAMLGHDTD ILDTYDTIIP EESDSFLKEA ERWKRMMEMI SRGDLKEMLC  180
TCAKTVAVND METTEWLMSE LRKMVSVSGN PIQRLGAYML EALVARLASS GSTIYKVLKC  240
KEPTGSELLS HMHLLYEICP YLKFGYMSAN GAIAEVMKEE SEVHIIDFQI NQGIQWVSLI  300
QAVAGRPGAP PKIRITGFDD STSAYAREGG LEIVGARLSR LAQSYNVPFE FHAIRAAPTE  360
VELKDLALQP GEAIAVNFAM MLHHVPDECV DSRNHRDRLV RLAKCLSPKI VTLVEQESHT  420
NNLPFFPRFV ETMNYYLAIF ESIDVALPRE HKERINVEQH CLAREVVNLI ACEGAERVER  480
HELLKKWRSR FTMAGFTPYP LNSFVTCSIK NLQQSYQGHY TLEERDGALC LGWMNQVLIT  540
SCAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-591795458375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23866.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028200571.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A0B2QQN20.0A0A0B2QQN2_GLYSO; Scarecrow-like protein 5
STRINGGLYMA14G01960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]