PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23675.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 390aa    MW: 42713.5 Da    PI: 8.3444
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23675.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.43.2e-4195171278
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 C v+gC+adls++++yhrrhkvCevhsk+++v + g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  KHN23675.1  95 CLVDGCHADLSNCRDYHRRHKVCEVHSKTAQVSIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 171
                 **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.7E-3488156IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.87292169IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-3893174IPR004333Transcription factor, SBP-box
PfamPF031102.1E-3095168IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDWNLKALSW DLSEVDQANL PNMETMEGSS RYGMYRTKGE FSVDLKLGQV GNSGTESVLT  60
KSKDAVGVSK MTSSSTSGSS KRARALSNGT QTVSCLVDGC HADLSNCRDY HRRHKVCEVH  120
SKTAQVSIGG QKQRFCQQCS RFHSLEEFDE GKRSCRKRLD GHNRRRRKPQ PESLTRSGSF  180
LSNYQGTQLL PFSSSHEYPS TTVVNPTWGG VLTTSGDVRL HGHNQHHHQV HLADKQDLFL  240
GSSPAGFKEG KQLAFMQGDH TLNNRSPHLP GASVGQAQMF LRTSLYSESD GLRCKMFCDS  300
LTSSIQDNNT SRALSLLSSP PQPLSPGNGL NLMVNSHSPL MQPLGLSLHD NSLGSVDPVL  360
GPNDSSSMYN IGSNGSQGNE APPLFPFQWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-28951681184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151168KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23675.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-155AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028233484.10.0squamosa promoter-binding-like protein 13A
RefseqXP_028233485.10.0squamosa promoter-binding-like protein 13A
RefseqXP_028233486.10.0squamosa promoter-binding-like protein 13A
RefseqXP_028233487.10.0squamosa promoter-binding-like protein 13A
RefseqXP_028233488.10.0squamosa promoter-binding-like protein 13A
RefseqXP_028233489.10.0squamosa promoter-binding-like protein 13A
TrEMBLA0A0B2QQJ30.0A0A0B2QQJ3_GLYSO; Squamosa promoter-binding-like protein 13
STRINGGLYMA05G38180.80.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-74SBP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]