PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN23184.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 264aa MW: 28759.2 Da PI: 9.4789 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70 | 2.2e-22 | 18 | 66 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ +n++n qvtfskRr g++KKA+EL++LC+a va+++fs+ k++ + KHN23184.1 18 KKMSNDINLQVTFSKRRSGLFKKASELCTLCGASVALVVFSPGEKVFSF 66 5689***************************************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.418 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.3E-32 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.41E-28 | 11 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.52E-37 | 11 | 80 | No hit | No description |
PRINTS | PR00404 | 4.8E-19 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-23 | 20 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-19 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-19 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MSSSEAKKSR GRQRIEIKKM SNDINLQVTF SKRRSGLFKK ASELCTLCGA SVALVVFSPG 60 EKVFSFGHPS VDGVIERYLK RGPPPEAGNM HYMAKVIELN GQLTHINDQL EAERKHAEKL 120 NRKQKEAEAQ LWWARPVEGM IIMENLEKLK KAFEELKQQV AGLADMALSQ SVANGNPGHQ 180 FFPGASSSAI PNVVLQPPSL PVAQVFPPIT HMMLPPPPIM FQNYTLPDHG SMMMNPNGFN 240 NDMGMGGGGA FGVPGPSSAG GCFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 1e-15 | 11 | 87 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3kov_B | 1e-15 | 11 | 87 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3kov_I | 1e-15 | 11 | 87 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3kov_J | 1e-15 | 11 | 87 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_A | 1e-15 | 11 | 87 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_B | 1e-15 | 11 | 87 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_C | 1e-15 | 11 | 87 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_D | 1e-15 | 11 | 87 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_I | 1e-15 | 11 | 87 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_J | 1e-15 | 11 | 87 | 1 | 77 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN23184.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028183213.1 | 0.0 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 9e-48 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0B2QSV8 | 0.0 | A0A0B2QSV8_GLYSO; Agamous-like MADS-box protein AGL62 | ||||
STRING | GLYMA10G40070.1 | 1e-166 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-46 | AGAMOUS-like 62 |