PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23034.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 288aa    MW: 32345.4 Da    PI: 9.001
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23034.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.5e-32255255
     G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                prlrWtp+LH rF++av++LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+
  KHN23034.1  2 PRLRWTPDLHLRFIHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 55
                8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.034158IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-28156IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-23257IPR006447Myb domain, plants
SuperFamilySSF466892.87E-14256IPR009057Homeodomain-like
PfamPF002497.3E-10354IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MPRLRWTPDL HLRFIHAVQR LGGQERATPK LVLQLMNIKG LSIAHVKSHL QMYRSKKVDT  60
NQVLADPRLL VETGDRNVYN LSQLPMLQGY NPSQSSAYRQ YGYGDASLAI YENMVHGPFM  120
NRSSLDESGA EFCGSRLTHG TNSNINWIHN MFQVDSSSSF NEPSTSKVHE PKHKFFSFGG  180
NESSSTQIKM SQVDLHLSTQ PQPSAQELMP NNKFTTNEME LKTLKRKASD IDLDLNLSLK  240
LNSRVSAENQ GSMVDHEVVD SNLSLSLCSQ SSSFSSSKLK KAQDHSKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-18357458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-18357458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-18357458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-18357458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-18357458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-18357458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-18357458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-18357458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23034.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583665.10.0myb family transcription factor EFM isoform X1
RefseqXP_025985036.10.0myb family transcription factor EFM isoform X1
RefseqXP_028240507.10.0myb family transcription factor EFM-like isoform X1
TrEMBLA0A0B2QSE20.0A0A0B2QSE2_GLYSO; Putative Myb family transcription factor
STRINGGLYMA07G18870.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-45G2-like family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]