PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN23030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 437aa MW: 49582.9 Da PI: 8.8817 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.6 | 9.4e-18 | 8 | 96 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +l+ + +l+s++l++p +f++++g + s+ tl+ ++g +W + l +k ++r+++ +GW++Fv+ + +g f+vF+++g+s+f v++f+ KHN23030.1 8 KLVLPTTLQSRQLRIPDNFLRKYGTQ--LSTIATLTVPDGSVWPIGL--KKADNRIWFVDGWQDFVQRYSIGVGYFLVFMYEGNSSF--IVHIFN 96 445567778888***********966..9999***************..*************************************9..999986 PP | |||||||
2 | B3 | 60.3 | 3.3e-19 | 303 | 394 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 vl ps+ + ++++lp +fae++ +g++ ++l+ ++gr+W+v++ yr+++ l++GW eF +n+L egD++vF+l + +e l v+vfr KHN23030.1 303 VLRPSYLYRGCIMYLPSTFAEKNlNGVSG---FIKLQLSNGRQWSVRCLYRGGR--AKLSQGWFEFTVENNLGEGDVCVFELLRMKEVVLQVTVFRV 394 78899******************876743...59999999********665555..66***********************9988999999999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.0E-23 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-24 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.46E-19 | 4 | 96 | No hit | No description |
PROSITE profile | PS50863 | 13.352 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-16 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-15 | 10 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-24 | 292 | 393 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-24 | 293 | 394 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.43E-22 | 298 | 393 | No hit | No description |
PROSITE profile | PS50863 | 14.325 | 300 | 395 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-19 | 300 | 395 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.0E-17 | 303 | 393 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MPRPCFDKLV LPTTLQSRQL RIPDNFLRKY GTQLSTIATL TVPDGSVWPI GLKKADNRIW 60 FVDGWQDFVQ RYSIGVGYFL VFMYEGNSSF IVHIFNLSTS EVNYQSAMRN HNEGSCFANY 120 HHIFDEMEDV DSLGLSDLSP QYLTPGALQS KGFAGSVDQL TPGKSHTPAL QNLFNGGSKL 180 NRVNWGDGGS AFSLKDANSQ GNQSTRDIGV QFNAVEFKRS TEELKLRYSN SNEEAVNKTA 240 KKKRKSEPYG EEPSGENEEE AEMRYRFYES ASARKRTVTA EERERAINAS KTFEPTNPFC 300 RVVLRPSYLY RGCIMYLPST FAEKNLNGVS GFIKLQLSNG RQWSVRCLYR GGRAKLSQGW 360 FEFTVENNLG EGDVCVFELL RMKEVVLQVT VFRVTEDAGL LNQLPMQQQQ QSPNISHTKL 420 LNPHLQHRIS TTKLIRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 9e-72 | 266 | 396 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 9e-72 | 266 | 396 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN23030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094686 | 0.0 | BT094686.1 Soybean clone JCVI-FLGm-24P12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003529203.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
Refseq | XP_028240648.1 | 0.0 | B3 domain-containing transcription factor VRN1-like | ||||
Swissprot | Q8L3W1 | 1e-125 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A0B2QNI9 | 0.0 | A0A0B2QNI9_GLYSO; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | I1KKQ6 | 0.0 | I1KKQ6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G21160.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-125 | B3 family protein |
Publications ? help Back to Top | |||
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