PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22805.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 414aa    MW: 47897.8 Da    PI: 5.0466
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22805.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.82.3e-20103190189
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                 +fY+ YAk+ GFsvrks+  ++    e+ ++tfvCs+ g+r+ ++++ ++ r++++e+++gC+a+++v+ +  +++w+vt  + eHnH l
  KHN22805.1 103 QFYCWYAKMSGFSVRKSHIVRN-SFMETLQQTFVCSCAGYRKVTTSD-TRIRKEKKESKCGCEAMFRVHVHFsTDRWYVTCWNFEHNHVL 190
                 6*****************9999.55569***************9999.9**********************99***************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.7E-18103191IPR004330FAR1 DNA binding domain
PROSITE profilePS501588.532338354IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MSELETTDNF RSFVNGDGAN DDGDYENDDN YQDDVGVQDE EEVDSELQNE DDGDYDEFWI  60
PGLSKEECIS IDNMVDIRQF DMKEISDEVV RRLDFGDLEL AYQFYCWYAK MSGFSVRKSH  120
IVRNSFMETL QQTFVCSCAG YRKVTTSDTR IRKEKKESKC GCEAMFRVHV HFSTDRWYVT  180
CWNFEHNHVL LDLKLSCLLA GHRKMSASDI MQVENYRKVG IRPPHMYAAF ANQCGGYENV  240
GFIRKDIYNE EGRIRRQHSS DARGALKYLY DLRKKEPMMY VSCTTDEESR LQRLFWSDTE  300
SQLLYQVFGD ILAFDATYKK NKYLCPFVVF SGVNHIQKCR QCGGIGHNKR SCTNRPRNVN  360
GCMSSTEQTN TMLQATHESY SEVVMITICI LLMLDKMQEP QTQSFVAGSS CVGP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22805.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352100.0AC235210.1 Glycine max strain Williams 82 clone GM_WBb0019I19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006603498.11e-164protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0B2QMX70.0A0A0B2QMX7_GLYSO; Protein FAR1-RELATED SEQUENCE 5
STRINGGLYMA10G23966.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-29FAR1-related sequence 5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]