PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22663.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-PHD
Protein Properties Length: 699aa    MW: 79376 Da    PI: 9.9238
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22663.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.28.7e-11486530953
                 HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
    Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                 ++ +e+L ++F++n  p ++ re L+k+lgL++++V+ WF+N R+
  KHN22663.1 486 RDAVERLRQVFAENELPPRSIREGLSKELGLDTEKVSKWFKNARY 530
                 67899**************************************97 PP
2PHD34.93.6e-12225279251
                 BTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
         PHD   2 CkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                 C  C+   +  +++++lC+ +C+++fH+kCl+++l++e++  g   w+C+ C++k
  KHN22663.1 225 CVKCKVheELPDNDIILCNgKCERAFHQKCLDPPLDTENISPGeqGWFCKFCECK 279
                 88888843445*******956******************999899*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.09E-13215282IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.5E-11219279IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.46222279IPR019787Zinc finger, PHD-finger
CDDcd155045.09E-26224276No hitNo description
SMARTSM002499.5E-8224277IPR001965Zinc finger, PHD-type
PROSITE patternPS013590225276IPR019786Zinc finger, PHD-type, conserved site
PfamPF006282.0E-9225279IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:1.10.10.604.0E-11468529IPR009057Homeodomain-like
SuperFamilySSF466898.13E-10471531IPR009057Homeodomain-like
PROSITE profilePS5007111.418475535IPR001356Homeobox domain
CDDcd000866.67E-8476530No hitNo description
SMARTSM003893.0E-8477539IPR001356Homeobox domain
PfamPF000462.2E-8486530IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MRDSEKKLNN KGSKKSSPLK VRKKGQGKKE KVKVGSKSHT KNAGTDISRK RVISSLKVKG  60
PRKDSSDKKL ITGKKLPMKN KKSSQKSSSK LQGKKASLSS RKEGGDADGA VKLQKMKRKR  120
KKKRPRNNVD LDDPSRLQRR TRYLLIKMKL EQNLIDAYSG EGWKGQSREK IRPEKELQRA  180
RKQILKCRLG IRDAIRQLDS LGSLSSIEDS AIALDGSVCH EHILCVKCKV HEELPDNDII  240
LCNGKCERAF HQKCLDPPLD TENISPGEQG WFCKFCECKM EILEATNAHL GTHFSLHSTW  300
QDVFKEEAAI PDGEIALLNP EQEWPSDDSE DDDYDPERKE DSHNINIEGT NDSASEDLSS  360
STSLCSSDGE CSPIDGVSHE YFSVNSSIDS DESEDKACGR RQRKAVDYKK LYDEMFGKDA  420
PAYELLSEDE DWGPGKRKRR EKESDAVDSL MTLHESENRH PNNEHNMTSK DSSSIKIKRH  480
CFRIPRDAVE RLRQVFAENE LPPRSIREGL SKELGLDTEK VSKWFKNARY LALKNGKHQA  540
EGVADQLQSI TSTKNRLQKQ ENVDPLKSKT SKITRTHSQK DVKNVNGRKK MKSSNKKRQP  600
EIPPPPGENG MKDFMEISDD VSLKKLLKKR KKRLINFTFG GDSQLAELEF ERLSELKTKV  660
DSMKQKLTAI QNYRVKGSPY SNEPSIVYVP TAVLREKVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115122MKRKRKKK
2117123RKRKKKR
3436441RKRREK
4622630LKKLLKKRK
5624630KLLKKRK
6626633LKKRKKRL
7627631KKRKK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22663.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-172AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028195653.10.0pathogenesis-related homeodomain protein-like
RefseqXP_028195654.10.0pathogenesis-related homeodomain protein-like
SwissprotP487851e-147PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A0B2QS420.0A0A0B2QS42_GLYSO; Pathogenesis-related homeodomain protein
STRINGGLYMA13G00540.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-146pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]