PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22483.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 386aa    MW: 44725.5 Da    PI: 6.6802
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22483.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1311.2e-401252872136
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssaseceaesss 79 
                 +gk+drhski T++g+RdRR+Rls+e+a+rfF Lqd+L fdk+skt+eWLl+qak +i  l++                      +ss+          
  KHN22483.1 125 PGKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLNFDKASKTVEWLLNQAKVEINRLVKEkqkqqqqqkkkkendhhyyqsCSSA---------- 213
                 689*************************************************************5555444444443333333332222.......... PP

         TCP  80 ssasnsssg.........................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                         +                         + +k  + + k++++ +++  lake r++ar+rarertrekmr++ +l
  KHN22483.1 214 --------SsecdqegvscldevvvggdqeqqqeRVEKVVKRKVKNSRKISAFDPLAKECRERARERARERTREKMRNRGVL 287
                 ........13344444455555555555555543333333355566666677899999********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-43126283IPR005333Transcription factor, TCP
PROSITE profilePS5136932.352127185IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.756263280IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MQSQSSDTFP SHNRNDPISY YDPAFYYYNS RPFFIDSESN PTSKQENNNN NCDLVPSPPP  60
PLSFFHFPSP TFEDTQNQIF LEQRHDFLLQ FYHQPLPQDP EPQPVITTMD LSVKKSDQIQ  120
RKRVPGKRDR HSKINTARGL RDRRMRLSLE VAKRFFGLQD MLNFDKASKT VEWLLNQAKV  180
EINRLVKEKQ KQQQQQKKKK ENDHHYYQSC SSASSECDQE GVSCLDEVVV GGDQEQQQER  240
VEKVVKRKVK NSRKISAFDP LAKECRERAR ERARERTREK MRNRGVLAEE SKQCGEETNQ  300
DLIQLGSWNP FETGDQESAG AKRTTTHSVA ENPSSLDVIT IEAKEQSYHA AKEHDDDDDD  360
SLVVLSKWSP SLIFNNYGFS QDVSLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267279RARERARERTREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22483.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028237437.10.0transcription factor DICHOTOMA-like
TrEMBLA0A0B2QRH80.0A0A0B2QRH8_GLYSO; Transcription factor TCP18
STRINGGLYMA06G23410.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.26e-26TCP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]