PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN22418.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 296aa MW: 33198.5 Da PI: 4.706 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.2 | 1.3e-12 | 119 | 165 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h + Er+RR+++ s+f L +P + kK++Ka +L++A++Y+k+Lq KHN22418.1 119 NHIMSERNRRQELTSKFIALAATIPGL-----KKMDKAHVLREAINYVKQLQ 165 7999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.104 | 115 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.17E-12 | 118 | 169 | No hit | No description |
SuperFamily | SSF47459 | 7.33E-17 | 118 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-10 | 119 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-16 | 119 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 121 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MEENPWGSWS SDMEVDDEVA NESLCHTNLF DEEFLRDILQ RPQEGAPNLN NSSIMSSLCA 60 QDIKPTTLFP TTYILSFDNS AALLPTETDR DSSSSKLPSS NSRANHGIKK PGSASESLNH 120 IMSERNRRQE LTSKFIALAA TIPGLKKMDK AHVLREAINY VKQLQERVEE LEEDIQKNGV 180 ESEITITRSH LCIDDGTNTD ECYGPNEALP EVEARVLGKE VLIKIHCGKH YGILLEVMSE 240 LERLHLYISA SNVLPFGNTL DITIIAQMGD KYNLVAKDLV KELRQVAMMK SCYVQQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN22418.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093707 | 0.0 | BT093707.1 Soybean clone JCVI-FLGm-14A22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028203007.1 | 0.0 | transcription factor bHLH18-like | ||||
TrEMBL | A0A0B2QRC8 | 0.0 | A0A0B2QRC8_GLYSO; Transcription factor bHLH25 | ||||
STRING | GLYMA15G00750.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15398 | 7 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-44 | bHLH family protein |
Publications ? help Back to Top | |||
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