PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22417.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 348aa    MW: 39511.6 Da    PI: 6.3284
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22417.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-13171220155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++ ++f  L   +P +      K +K+++L kA++Y+k+Lq
  KHN22417.1 171 KRASHIMAERKRRQQLTQSFIALSATIPGL-----NKKDKSSMLGKAIDYVKQLQ 220
                 79***************************8.....599****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-17168240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-11168223No hitNo description
PROSITE profilePS5088815.167170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-17171235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-13176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDDWLSDQDM GGDNSFFSEE HRNPTLYCVA NETRNQLRRS KDTDTGSHYV REKKETANGR  60
DIHSAFSYYT WLEQVGQGLL GAGEDRMEQS YSWENWALDK EMGEDEEEFL RDILSKPAFS  120
SESESQAPVV SCSAKSKRAP MTYILSFDNS TITPAPSSPP TLEAQPGKRA KRASHIMAER  180
KRRQQLTQSF IALSATIPGL NKKDKSSMLG KAIDYVKQLQ ERVTELEQRK KRGKESMIIL  240
KKSEANSEDC CRANKMLPDV EARVTENEVL IEIHCEKEDG LELIKILDHL ENLHLCVTAS  300
SVLPFRNSTL SITIIAQMGD AYKMKVNDLV KKLRQVLLNH TNVNTNPY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22417.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0985340.0BT098534.1 Soybean clone JCVI-FLGm-12J15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028202483.10.0transcription factor bHLH25-like isoform X1
SwissprotQ9T0722e-40BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A0B2QRV80.0A0A0B2QRV8_GLYSO; Transcription factor bHLH25
STRINGGLYMA15G00730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131101230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-42bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]