PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22337.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 159aa    MW: 17950 Da    PI: 9.6869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22337.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-173382255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a   l+g
  KHN22337.1 33 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYATPVAAARAYDTAVFHLRG 82
                69*****99.**********9...336**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.89E-213391IPR016177DNA-binding domain
PROSITE profilePS5103222.1553390IPR001471AP2/ERF domain
SMARTSM003801.4E-373396IPR001471AP2/ERF domain
PfamPF008471.4E-103482IPR001471AP2/ERF domain
CDDcd000187.87E-283492No hitNo description
Gene3DG3DSA:3.30.730.101.5E-303491IPR001471AP2/ERF domain
PRINTSPR003675.0E-123445IPR001471AP2/ERF domain
PRINTSPR003675.0E-127292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MEEAGLGDCC SSNTTITRKS EKRKQQHQQQ EKPYRGIRMR KWGKWVAEIR EPNKRSRIWL  60
GSYATPVAAA RAYDTAVFHL RGPSARLNFP ELLSQDDDVS TQQQGKMSAD SIRQKATQVG  120
ARVDALQTAL QQSSSTHSIS SSHVSYEKPD LNEYPKPED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-163290463ATERF1
3gcc_A9e-163290463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11724RKSEKRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22337.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2089680.0DQ208968.1 Glycine max dehydration-responsive element binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237254.21e-116dehydration-responsive element binding protein 2
RefseqXP_028234921.11e-116ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC303e-50RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLQ2VEU41e-115Q2VEU4_SOYBN; Dehydration-responsive element binding protein 2
STRINGGLYMA06G04490.21e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.11e-47DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]