PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN22310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 232aa MW: 26278.3 Da PI: 9.6889 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.4 | 4.8e-17 | 132 | 221 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k +++s+v+ +l lp +f++++ k ++ +tl de+g +++ + ++ + l++GW++F+ a++L +gD ++F+l++r++f +v ++r KHN22310.1 132 FIKSMLQSHVSGGFWLGLPVHFCKSNLPK--KDEVVTLIDEDGTEYSTIY--LAGKTG--LSGGWRGFAIAHDLADGDALIFQLIKRTTF--KVYIVR 221 89*********************999533..4458***************..555544..*************************98888..888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.44E-24 | 126 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.7E-21 | 126 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.06E-27 | 130 | 221 | No hit | No description |
Pfam | PF02362 | 6.7E-15 | 132 | 221 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-23 | 132 | 223 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.562 | 132 | 223 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MVAAIAYEES RRKRVEENKK RMEALNLPLL SQALQKSSPS PKSSPLKQVK HRAIQKEVVV 60 VRRSSRVANL PSPVYKEIVI DRVTMPRRSL CRSYDKYRDY ANRVYASDEA REEALEKAEK 120 LMSGLESEYP AFIKSMLQSH VSGGFWLGLP VHFCKSNLPK KDEVVTLIDE DGTEYSTIYL 180 AGKTGLSGGW RGFAIAHDLA DGDALIFQLI KRTTFKVYIV RAICPPDDKQ LE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN22310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003528263.1 | 1e-172 | B3 domain-containing protein At5g42700 | ||||
Refseq | XP_006581238.1 | 1e-172 | B3 domain-containing protein At5g42700 | ||||
Refseq | XP_028234881.1 | 1e-172 | B3 domain-containing protein At5g42700-like | ||||
Refseq | XP_028234882.1 | 1e-172 | B3 domain-containing protein At5g42700-like | ||||
Refseq | XP_028234883.1 | 1e-172 | B3 domain-containing protein At5g42700-like | ||||
Swissprot | Q69V36 | 8e-75 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A445K4C1 | 1e-171 | A0A445K4C1_GLYSO; B3 domain-containing protein isoform A | ||||
TrEMBL | K7KSY2 | 1e-171 | K7KSY2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G04200.3 | 1e-171 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 5e-61 | B3 family protein |
Publications ? help Back to Top | |||
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