PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22209.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 301aa    MW: 33032.5 Da    PI: 7.7425
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22209.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702209.67.8e-651032423154
      DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101
                 s +++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrer+qqlaa++++++      ++kr++++      +++++  s  ++   le
  KHN22209.1 103 SMSMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERHQQLAALQQQHQ------HPKRHHRD------TTTTQLASAPQPIIGLE 189
                 6789**************************************************99855442......23333322......22223334456678999 PP

      DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                   ++P+evs++avfrcvrvs+vd ++e++aYqt+v+igGhvfkG+LydqG+e+
  KHN22209.1 190 LGQFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGFLYDQGPES 242
                 ***************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-61105241IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.0E-26107149IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.8E-25192240IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAGFFSLGGS QNKEEEEVEK GGDKNNLLLL RNEEIYNSKG GFEIWPQSSS SYHQHQNQAY  60
QNYFAFGVGP SRRNRSEDVS LCVSDHESTR FGLTVMRSGV SSSMSMNCQD CGNQAKKDCS  120
HLRCRTCCKS RGFQCQTHVK STWVPAAKRR ERHQQLAALQ QQHQHPKRHH RDTTTTQLAS  180
APQPIIGLEL GQFPPEVSTS AVFRCVRVSA VDASDEQCAY QTSVNIGGHV FKGFLYDQGP  240
ESSYTTSAAA EGSSGGEPQP LGLITGATTA TSGNNPFDPS LYPAPLNAFM AGTQFFQHPR  300
S
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00152DAPTransfer from AT1G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22209.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150355e-88AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527675.10.0protein SHI RELATED SEQUENCE 5
RefseqXP_028234734.10.0protein SHI RELATED SEQUENCE 5-like
RefseqXP_028234736.10.0protein SHI RELATED SEQUENCE 5-like
SwissprotQ9FXH74e-79SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBLA0A445K3R50.0A0A445K3R5_GLYSO; Protein SHI RELATED SEQUENCE 7
TrEMBLI1K7M70.0I1K7M7_SOYBN; Uncharacterized protein
STRINGGLYMA06G03030.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19790.21e-63SHI-related sequence 7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]