PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN22209.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 301aa MW: 33032.5 Da PI: 7.7425 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 209.6 | 7.8e-65 | 103 | 242 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101 s +++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrer+qqlaa++++++ ++kr++++ +++++ s ++ le KHN22209.1 103 SMSMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERHQQLAALQQQHQ------HPKRHHRD------TTTTQLASAPQPIIGLE 189 6789**************************************************99855442......23333322......22223334456678999 PP DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++P+evs++avfrcvrvs+vd ++e++aYqt+v+igGhvfkG+LydqG+e+ KHN22209.1 190 LGQFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGFLYDQGPES 242 ***************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.5E-61 | 105 | 241 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.0E-26 | 107 | 149 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.8E-25 | 192 | 240 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009299 | Biological Process | mRNA transcription | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MAGFFSLGGS QNKEEEEVEK GGDKNNLLLL RNEEIYNSKG GFEIWPQSSS SYHQHQNQAY 60 QNYFAFGVGP SRRNRSEDVS LCVSDHESTR FGLTVMRSGV SSSMSMNCQD CGNQAKKDCS 120 HLRCRTCCKS RGFQCQTHVK STWVPAAKRR ERHQQLAALQ QQHQHPKRHH RDTTTTQLAS 180 APQPIIGLEL GQFPPEVSTS AVFRCVRVSA VDASDEQCAY QTSVNIGGHV FKGFLYDQGP 240 ESSYTTSAAA EGSSGGEPQP LGLITGATTA TSGNNPFDPS LYPAPLNAFM AGTQFFQHPR 300 S |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00152 | DAP | Transfer from AT1G19790 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN22209.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 5e-88 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527675.1 | 0.0 | protein SHI RELATED SEQUENCE 5 | ||||
Refseq | XP_028234734.1 | 0.0 | protein SHI RELATED SEQUENCE 5-like | ||||
Refseq | XP_028234736.1 | 0.0 | protein SHI RELATED SEQUENCE 5-like | ||||
Swissprot | Q9FXH7 | 4e-79 | SRS7_ARATH; Protein SHI RELATED SEQUENCE 7 | ||||
TrEMBL | A0A445K3R5 | 0.0 | A0A445K3R5_GLYSO; Protein SHI RELATED SEQUENCE 7 | ||||
TrEMBL | I1K7M7 | 0.0 | I1K7M7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G03030.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19790.2 | 1e-63 | SHI-related sequence 7 |
Publications ? help Back to Top | |||
---|---|---|---|
|