PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN22170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 186aa MW: 21763 Da PI: 9.0249 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.4 | 3.7e-26 | 22 | 111 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA++ GF vr ++ ++s+ +++i++r+f C+k+g++ + ++kt+ +++ra+ r gC+a++ vk ++ gkw+vtk+++eH+H l+ KHN22170.1 22 NFYEEYARREGFVVRLDRCHRSEVDKQIISRRFSCNKQGFHVRVRNKTKPVHKPRASIREGCEAMMYVKVNTCGKWVVTKFVKEHSHLLN 111 6*******************************************9999***************************************885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.8E-23 | 22 | 111 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
EGSSIEEPNV GMEFQSEEAA KNFYEEYARR EGFVVRLDRC HRSEVDKQII SRRFSCNKQG 60 FHVRVRNKTK PVHKPRASIR EGCEAMMYVK VNTCGKWVVT KFVKEHSHLL NASALPYNSL 120 IESKDRIIQQ LAKELEHQDR LCQHYRRQLF SLLETVDEQT KCLSTKVELV VNTVKKLENE 180 VQKPLI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN22170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097755 | 0.0 | BT097755.1 Soybean clone JCVI-FLGm-16I6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006576241.1 | 1e-137 | uncharacterized protein LOC100802375 isoform X1 | ||||
Refseq | XP_028224876.1 | 1e-137 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A445L9L5 | 1e-136 | A0A445L9L5_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform B | ||||
TrEMBL | K7KDZ0 | 1e-136 | K7KDZ0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G22670.2 | 1e-137 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 7e-55 | FAR1 family protein |