PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22139.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 321aa    MW: 36204.8 Da    PI: 6.3251
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22139.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.1e-10148195355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r h ++Er+RR+++  ++  L   +P +     kK++Ka +L++Av+Y k+Lq
  KHN22139.1 148 RHHIIAERKRRQELTGSIIALSATIPGL-----KKMDKAYVLREAVNYTKQLQ 195
                 5799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.859145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.53E-8148199No hitNo description
SuperFamilySSF474592.09E-14148207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-8148195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-14149206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-10151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEEYDDVLNE SHHGSFDEQE FLREILEEQP ENLSPQRENI CSTSPTNSTV SFDEAISFNY  60
ASGSTLHKSN SSNSIKSLKR SSSSSVSPAS TTTTTTTTYL LSFDTSIVEP ITLKPSPKLD  120
VVKDGSEFDA LMPQTQPKKK VRRSCETRHH IIAERKRRQE LTGSIIALSA TIPGLKKMDK  180
AYVLREAVNY TKQLQERVKE LENQNKVDSA TFIRKSEASS DKNTGNCETN KEISLFEVEA  240
RVLDKEVLIG IHCEKQKDIV FKIHALLRNL HLSTTSSTVL PFGTSTLIIN IIAQMNGEYS  300
MTKDDLVKKL REYLLEVYDM Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137157KKKVRRSCETRHHIIAERKRR
2153158ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22139.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028179729.10.0transcription factor NAI1-like
TrEMBLA0A445J5P50.0A0A445J5P5_GLYSO; Transcription factor bHLH25
STRINGGLYMA18G48126.11e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149471112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-39bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]