PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN22130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 704aa MW: 76968.7 Da PI: 6.8158 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.1 | 3.3e-11 | 265 | 321 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g KHN22130.1 265 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 321 57*******************4444.2455535555.779999**************98 PP | |||||||
2 | AP2 | 46.3 | 1.1e-14 | 364 | 415 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g KHN22130.1 364 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 415 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.05E-14 | 265 | 331 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-8 | 265 | 321 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.93E-19 | 265 | 331 | No hit | No description |
PROSITE profile | PS51032 | 17.319 | 266 | 329 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-12 | 266 | 330 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-22 | 266 | 335 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 267 | 278 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-10 | 364 | 415 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 364 | 425 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.52E-25 | 364 | 425 | No hit | No description |
PROSITE profile | PS51032 | 19.058 | 365 | 423 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-18 | 365 | 424 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.0E-34 | 365 | 429 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 405 | 425 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 704 aa Download sequence Send to blast |
MGSMNLLGFS LSPHEEHPSS QDHSQTTPSR FSFNPDGSIS STDVAGGCFD LTSDSTPHLL 60 NLPSYGIYEA FHRNNSINTT QDWKENYNSQ NLLLGTSCNK QNMNQNQQQQ PKLENFLGGH 120 SFGEHEQTYG GNSASTDYMF PAQPVSAGGG GSGGGSNNNN NSNSIGLSMI KTWLRNQPPN 180 SENINNNNES GGNIRSSVQQ TLSLSMSTGS QSSTSLPLLT ASVDNGESSS DNKQPNTSAA 240 LDSTQTGAIE TAPRKSIDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQTRKGRQG 300 GYDKEEKAAR AYDLAALKYW GTTTTTNFPI SHYEKELEEM KHMTRQEYVA SLRRKSSGFS 360 RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDVAA IKFRGLSAVT 420 NFDMSRYDVK SILESTTLPI GGAAKRLKDM EQVELSVDNG HRADQVDHSI IMSSHLTQGI 480 NNNYAGGGTA THHNWHNAHA FHQPQPCTTM HYPYGQRINW CKQEQQDNSD APHSLSYSDI 540 HQLQLGNNGT HNFFHTNSGL HPMLSMDSAS IDNSSSSNSV VYDGYGGGGG YNVMPMGTTT 600 AVVASDGDQN PRSNHGFGDN EIKALGYESV YGSATDSYHA HARNLYYLTQ QQSSSVDTVK 660 ASAYDQGSAC NTWVPTAIPT HAPRSTTSMA LCHGATTPFS LLHE |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00610 | ChIP-seq | Transfer from AT5G17430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN22130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM775856 | 0.0 | HM775856.1 Glycine max babyboom 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006586645.1 | 0.0 | babyboom 1 isoform X1 | ||||
TrEMBL | A0A0B2QKY2 | 0.0 | A0A0B2QKY2_GLYSO; AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | A0A0R0ID31 | 0.0 | A0A0R0ID31_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G38370.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8186 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 1e-129 | AP2 family protein |
Publications ? help Back to Top | |||
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