PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN22110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 186aa MW: 20961.9 Da PI: 8.1655 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 202.2 | 2e-62 | 6 | 159 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101 ++ ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ ++ + e + ++ ++++ ++ +++ KHN22110.1 6 IDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV---QGSGHCNPEYRIDTGSTSK-------CNNRIAM--- 91 66789********************************************99999998884...4444444444443333222.......2222222... PP YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +v++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl KHN22110.1 92 R-APTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 159 2.2233344445689****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.2E-70 | 9 | 159 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.19E-8 | 103 | 152 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.3E-4 | 107 | 153 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 186 aa Download sequence Send to blast |
MSSCSIDVAP EQLCYIPCNF CNIVLAVSVP CSSLFDIVTV RCGHCTNLWS VNMAAAFQSL 60 SWQDVQGSGH CNPEYRIDTG STSKCNNRIA MRAPTTHVTE ERVVNRPPEK RQRVPSAYNQ 120 FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LESNNQVKME NVSEKHLMSR 180 AALLNK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN22110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT095084 | 0.0 | BT095084.1 Soybean clone JCVI-FLGm-6P7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001344755.1 | 1e-139 | protein YABBY 13 | ||||
Refseq | XP_028188440.1 | 1e-139 | axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 5e-90 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A0B2QKW2 | 1e-137 | A0A0B2QKW2_GLYSO; Axial regulator YABBY 5 | ||||
TrEMBL | I1LZN8 | 1e-137 | I1LZN8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G22620.1 | 1e-138 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-92 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|