PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN22077.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 327aa MW: 35603.2 Da PI: 6.558

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN22077.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.9	2e-09	176	220	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L KHN22077.1 176 HSIAERLRRERIAERMKALQELVPSiN------KTDRAAMLDEIVDYVKFL 220 99*********************77......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.81E-10	169	225	No hit	No description
SuperFamily	SSF47459	3.79E-15	169	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.126	171	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-14	173	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-7	176	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-11	177	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MAGNSSSEGL VDDFFEQILA VPEAAAFRGA AGLMPLGLNL EQAGFLRHQH QINVDDVVHV 60 NVDDATIHHH HLTLHNNTTS SSPSSTAPIT DRDSMHMRGL FSAFGQLHTP TLAHSIRPTL 120 PSPPPPRQPQ LHLHHHNNQQ FQGQPAAAPA SMAAMPQPPG IRPRVRARRG QATDPHSIAE 180 RLRRERIAER MKALQELVPS INKTDRAAML DEIVDYVKFL RLQVKVLSMS RLGGAGAVAQ 240 LVADVPLSAV EGDQDIEGVS NEQAWDKWSN DGTEQQVAKL MEEDVGAAMQ FLQSKALCIM 300 PISLASSIFC MPQSEASTGI KPESNSH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	185	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN22077.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT141638	1e-171	BT141638.1 Lotus japonicus clone JCVI-FLLj-6C12 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028185439.1	0.0	transcription factor UNE12-like isoform X4
Swissprot	O22768	9e-76	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A0B2QQU9	0.0	A0A0B2QQU9_GLYSO; Transcription factor UNE12
STRING	GLYMA10G30430.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11205	32	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	3e-63	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]