PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN22055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 574aa MW: 63565.7 Da PI: 8.5516 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00017 | 78 | 98 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H KHN22055.1 78 CEICNKGFQRDQNLQLHRRGH 98 *******************88 PP | |||||||
2 | zf-C2H2 | 11 | 0.0013 | 153 | 175 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + KHN22055.1 153 WKCDKCSKKYAVQSDWKAHSKIC 175 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.7E-5 | 75 | 98 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.37E-7 | 75 | 98 | No hit | No description |
SMART | SM00355 | 0.11 | 76 | 98 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.824 | 76 | 98 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 78 | 98 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 78 | 118 | 148 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.3E-5 | 141 | 174 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.37E-7 | 148 | 173 | No hit | No description |
SMART | SM00355 | 150 | 153 | 173 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence Send to blast |
MMSEETFSVP PPNSTIRATS LVHHHAHVQP PSPSPNPNPN PNSNPAKRRR SLPGTPDPDA 60 EVVALSPKSL MATNRFLCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRANK DQVRKKVYVC 120 PEKSCVHHDP SRALGDLTGI KKHYSRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY 180 KCDCGTLFSR KDSFITHRAF CDALAEESAR VTTVPAALSN LRNDHHHHLT NAQASRIPQI 240 NFSGFHSSDQ LFGGGSSEAL LANHHHHQQQ KLRLPLWLDH HQVNNNPQVL HHHTLNNFST 300 KPNGFTTNSG SGPNSVTDLV QTMDMFGSQT EFVNYRYPEA SFGGGNANVS VLPPHELKQE 360 QEENKEHLSH SGASYNNLYL SSSDIQNPPP HHHHYMSATT LLHKAVQMGS SRLMNDNVFG 420 SILGTTTTNS NNNNVVVEVQ KLNELVSVEA AGCTNNNLGG GYLLNDSNNS NSFVVVNGTN 480 KGGGLEHMVM PVDEETQQAS IMGKQLHSSL SSNNKNQQLG LTRDFLGVGD HNNSIDSIRR 540 PFLQQDPVEF NAMGSASASA SVMNLQSQYG GHYC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-36 | 149 | 214 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 3e-36 | 149 | 214 | 3 | 68 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 115 | KLKQRANKDQVRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN22055.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-157 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028190284.1 | 0.0 | zinc finger protein BALDIBIS-like | ||||
TrEMBL | A0A445I224 | 0.0 | A0A445I224_GLYSO; Protein indeterminate-domain 9 | ||||
STRING | GLYMA11G15950.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 1e-103 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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