PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN21943.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 673aa MW: 76594 Da PI: 6.224 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 386.1 | 4.2e-118 | 296 | 670 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lLl c + v ++d++ a++lL+++++++sp gd+ qRla+yft++L+arl++ +++ + ++++ +++e l+a+++f sP+ kf h+ aN KHN21943.1 296 LRNLLLMCSQSVYANDNRTANELLKQIRQHSSPVGDASQRLAHYFTNGLEARLVGDGTSAQGMYTFLSSKNITVAEFLKAYQVFTSSSPFKKFIHFFAN 394 6899**************************************************9666666555666666566************************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 ++I++a++++e+vHiiDf+i +G+QWp L++ +++R++gpp+lRiTg++ p++g +e++eetg+rLa+++++ +vpfe+n++++k++e++++e+L++ KHN21943.1 395 KMIMKAAAKAETVHIIDFGILYGFQWPILIKFFSNREGGPPKLRITGIEFPQPGfrPAERIEETGHRLANYCKRYNVPFEYNAIASKNWENIQVEALKI 493 *****************************************************9******************************9************** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +++E +aVn++l+ ++lldes +++s+r+ vL+l+++++P++++ + + ++n++ F++rf eal +ysa++d +++ +pre+e+r ++Erellgrei+ KHN21943.1 494 QSNELVAVNCHLRFENLLDESIEVNSPRNGVLHLIRKINPDIFTQSITNGSYNAPFFATRFREALFHYSAIYDLIDTVIPRENEWRLMLERELLGREIM 592 *************************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 nv+aceg+er+er et+++W r ++aGFk++pl+e+ +++ ++ l++ + + + +e+++++++gWk+r L++ ++W KHN21943.1 593 NVIACEGSERIERPETYKQWYVRNTRAGFKQLPLNEELMAKFRTKLKEWYHRDFVFDEDNKWMLQGWKGRILYASTCW 670 **************************************************999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.67 | 270 | 651 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-115 | 296 | 670 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MDSNFPGASE DQGTPYLSDS LGFATMEDND FSETAKFISQ ILMEENVDQK PFYDSLTLQV 60 TEKSFYDALA GNLPLSPDQH PVLLSPEAET TTTTTTSSSS SSSNNNFSDE YSRELKLRSP 120 DSISVSAFQF KSQPPPSVTV SDAVSDLDSS IAKLLAHNIF NHVDSVSQFR RGFEEASKFL 180 PPGPNLVTAL HSKREEPINS FGDNSYGLLK GRKNHQRQEI ETREEGEGER SNKQSALSLV 240 DESDLSDAFD RLLLHEGNLC DEHIRLTSGS VNVEERDGGK GRSKKQGRRK KETVDLRNLL 300 LMCSQSVYAN DNRTANELLK QIRQHSSPVG DASQRLAHYF TNGLEARLVG DGTSAQGMYT 360 FLSSKNITVA EFLKAYQVFT SSSPFKKFIH FFANKMIMKA AAKAETVHII DFGILYGFQW 420 PILIKFFSNR EGGPPKLRIT GIEFPQPGFR PAERIEETGH RLANYCKRYN VPFEYNAIAS 480 KNWENIQVEA LKIQSNELVA VNCHLRFENL LDESIEVNSP RNGVLHLIRK INPDIFTQSI 540 TNGSYNAPFF ATRFREALFH YSAIYDLIDT VIPRENEWRL MLERELLGRE IMNVIACEGS 600 ERIERPETYK QWYVRNTRAG FKQLPLNEEL MAKFRTKLKE WYHRDFVFDE DNKWMLQGWK 660 GRILYASTCW VPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-55 | 303 | 672 | 26 | 380 | Protein SCARECROW |
5b3h_A | 2e-55 | 303 | 672 | 25 | 379 | Protein SCARECROW |
5b3h_D | 2e-55 | 303 | 672 | 25 | 379 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 279 | 290 | KGRSKKQGRRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN21943.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003539082.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_028191532.1 | 0.0 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A445I2K7 | 0.0 | A0A445I2K7_GLYSO; Scarecrow-like protein 14 isoform A | ||||
TrEMBL | I1LK10 | 0.0 | I1LK10_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G14720.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-174 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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